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AT3G57200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41451.1); Has 94 Blast hits to 94 proteins in 31 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IID5eggNOG:ENOG410ZM43EMBL:AL137080EMBL:AY735623EMBL:AY954853EMBL:CP002686EnsemblPlants:AT3G57200
EnsemblPlants:AT3G57200.1entrez:824887GeneID:824887GO:GO:0005576GO:GO:0005737GO:GO:0005886GO:GO:0007049
GO:GO:0007275GO:GO:0009505GO:GO:0016757GO:GO:0030154GO:GO:0040008GO:GO:0051301GO:GO:0071555
Gramene:AT3G57200.1hmmpanther:PTHR10774hmmpanther:PTHR10774:SF95HOGENOM:HOG000006183InParanoid:Q5XV99iPTMnet:Q5XV99KEGG:ath:AT3G57200
OMA:NYKDATRPaxDb:Q5XV99Pfam:Q5XV99PhylomeDB:Q5XV99PIR:T45798PRIDE:Q5XV99PRO:PR:Q5XV99
Proteomes:UP000006548RefSeq:NP_191279.3TAIR:AT3G57200UniGene:At.51006UniProt:Q5XV99
Coordinates (TAIR10) chr3:+:21169413..21172103
Molecular Weight (calculated) 58427.40 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.38
Length 514 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLYSSSSS SKPTLSSSPS SSSSSRLFLL VTLLPLSLAC FAFVLQWRGG LDDPVTHWSI DHHEFPGMVT TQEKRSLRRS VSDSGCVDLL GQSRSPSFPY
101: FRNWKFDYHS DLKPRICITT STSAGLEQTL PWIYFHKVIG VSTFYLFVEG KAASPNVSRV LETIPGVKVI YRTKELEEKQ AKSRIWNETW LSSFFYKPCN
201: YELFVKQSLN MEMAITMAQD AGMEWIIHLD TDELIHPSGT HEYSLRKLLG NISADVDVVI FPNYESSVER DDIREPFSEV SMFKKNFDHL LRDVYFGNYK
301: DATRGNPNYF LTYGNGKAAA RVQDHLRPNG AHRWHNYRKS PNEVKLEEAA VLHYTYPRFS DLTSRRDRCG CKPTKVDVKR CFMLEFDRAA FIIASTASSE
401: EMLQWYREHV VWTDEKLKLK LLRKGILTRI YAPMVIIQEL REAGVFSSVV IAAHKSPSKN SSTADSTSGI TRESSQETGK RRVLEFHLDV DGESQASAVP
501: PQSPPGLEAT QMEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)