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AT3G49500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-dependent RNA polymerase 6
Curator
Summary (TAIR10)
Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.
Computational
Description (TAIR10)
RNA-dependent RNA polymerase 6 (RDR6); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 1 (TAIR:AT1G14790.1); Has 633 Blast hits to 609 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 284; Plants - 204; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G49500-MONOMERBioGrid:9430BRENDA:2.7.7.48EC:2.7.7.48eggNOG:ENOG410XQMQeggNOG:KOG0988EMBL:AC012329
EMBL:AF239718EMBL:AF268093EMBL:AL132964EMBL:CP002686EnsemblPlants:AT3G49500EnsemblPlants:AT3G49500.1entrez:824112
GeneID:824112Genevisible:Q9SG02GO:GO:0000166GO:GO:0001172GO:GO:0003723GO:GO:0003887GO:GO:0003968
GO:GO:0005634GO:GO:0009616GO:GO:0010267GO:GO:0016246GO:GO:0030422GO:GO:0031047GO:GO:0048366
GO:GO:0048440GO:GO:0048467GO:GO:0048544GO:GO:0051607Gramene:AT3G49500.1hmmpanther:PTHR23079hmmpanther:PTHR23079:SF1
HOGENOM:HOG000239464InParanoid:Q9SG02IntAct:Q9SG02InterPro:IPR007855InterPro:IPR012677KEGG:ath:AT3G49500KO:K11699
MINT:MINT-7014695ncoils:CoilOMA:FPVFDACPANTHER:PTHR23079PaxDb:Q9SG02Pfam:PF05183Pfam:Q9SG02
PhylomeDB:Q9SG02PRIDE:Q9SG02PRO:PR:Q9SG02ProteinModelPortal:Q9SG02Proteomes:UP000006548RefSeq:NP_190519.1SMR:Q9SG02
STRING:3702.AT3G49500.1SUPFAM:SSF54928TAIR:AT3G49500tair10-symbols:RDR6tair10-symbols:SDE1tair10-symbols:SGS2UniGene:At.65263
UniProt:Q9SG02
Coordinates (TAIR10) chr3:-:18349193..18353205
Molecular Weight (calculated) 136936.00 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.35
Length 1196 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGSEGNMKKS VVTQVSIGGF GESTTAKQLT DYLEDEVGIV WRCRLKTSWT PPGSYPNFEI ADTSNIPSID EYKKVEPHAF VHFAVFESAG RAMDAAGQCN
0101: LILDGQPLKV SLGPKNPYSL NQRRRTTVPY KLAGITLEIG TLVSRDDFFV SWRAEGVDFL VDPFDNTCKF CFRKSTAFSF KDAVMHAVIN CDYKLELLVR
0201: DIQTVRQYKT LHGFVLILQL ASSPRVWYRT ADDDIYDTVP GDLLDDDDPW IRTTDFTQVG AIGRCHSYRV LISPRYENKL RTALDYFRMR RVQEERVRWP
0301: PRIRNEPCFG EPVSDHFFCI HHKEGISFEI MFLVNSVLHR GVFNQFQLTE RFFDLLRNQP KDVNIASLKH LCTYKRPVFD AYKRLKLVQE WIQKNPKLLG
0401: SHEQSEDISE IRRLVITPTR AYCLPPEVEL SNRVLRRYKA VAERFLRVTF MDESMQTINS NVLSYFVAPI VKDLTSSSFS QKTYVFKRVK SILTDGFKLC
0501: GRKYSFLAFS ANQLRDRSAW FFAEDGKTRV SDIKTWMGKF KDKNVAKCAA RMGLCFSSTY ATVDVMPHEV DTEVPDIERN GYVFSDGIGT ITPDLADEVM
0601: EKLKLDVHYS PCAYQIRYAG FKGVVARWPS KSDGIRLALR DSMKKFFSKH TILEICSWTR FQPGFLNRQI ITLLSVLGVP DEIFWDMQES MLYKLNRILD
0701: DTDVAFEVLT ASCAEQGNTA AIMLSAGFKP KTEPHLRGML SSVRIAQLWG LREKSRIFVT SGRWLMGCLD EAGILEHGQC FIQVSKPSIE NCFSKHGSRF
0801: KETKTDLEVV KGYVAIAKNP CLHPGDVRIL EAVDVPQLHH MYDCLIFPQK GDRPHTNEAS GSDLDGDLYF VAWDQKLIPP NRKSYPAMHY DAAEEKSLGR
0901: AVNHQDIIDF FARNLANEQL GTICNAHVVH ADRSEYGAMD EECLLLAELA ATAVDFPKTG KIVSMPFHLK PKLYPDFMGK EDYQTYKSNK ILGRLYRRVK
1001: EVYDEDAEAS SEESTDPSAI PYDAVLEIPG FEDLIPEAWG HKCLYDGQLI GLLGQYKVQK EEEIVTGHIW SMPKYTSKKQ GELKERLKHS YNSLKKEFRK
1101: VFEETIPDHE NLSEEEKNIL YEKKASAWYH VTYHPEWVKK SLELQDPDES SHAAMLSFAW IAADYLARIK IRSREMGSID SAKPVDSLAK FLAQRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)