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AT3G30390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Encodes a putative amino acid transporter.
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G38820.1); Has 4285 Blast hits to 4220 proteins in 397 species: Archae - 8; Bacteria - 394; Metazoa - 1411; Fungi - 683; Plants - 986; Viruses - 5; Other Eukaryotes - 798 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1305EMBL:AF428287EMBL:AP001314EMBL:AY052201EMBL:CP002686EnsemblPlants:AT3G30390
EnsemblPlants:AT3G30390.1EnsemblPlants:AT3G30390.2entrez:822740GeneID:822740GO:GO:0005773GO:GO:0005774GO:GO:0016021
Gramene:AT3G30390.1Gramene:AT3G30390.2hmmpanther:PTHR22950hmmpanther:PTHR22950:SF237InterPro:IPR013057KEGG:ath:AT3G30390KO:K14207
OMA:ICVLVNNPfam:PF01490PhylomeDB:Q9LI61Proteomes:UP000006548Reactome:R-ATH-210455Reactome:R-ATH-210500Reactome:R-ATH-352230
RefSeq:NP_001030795.1RefSeq:NP_566854.1STRING:3702.AT3G30390.1TAIR:AT3G30390TMHMM:TMhelixUniGene:At.21575UniProt:Q9LI61
Coordinates (TAIR10) chr3:-:11977112..11978827
Molecular Weight (calculated) 49520.10 Da
IEP (calculated) 6.50
GRAVY (calculated) 0.73
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)