AT3G24870.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Helicase/SANT-associated, DNA binding protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Helicase/SANT-associated, DNA binding protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), HSA (InterPro:IPR006562), Homeodomain-like (InterPro:IPR009057), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Helicase/SANT-associated, DNA binding protein (TAIR:AT3G24880.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:9075237..9084278 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 205241.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1899 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MHGSVSGYLL VNAEVDSMGG VIDSGGGIGV KTSPRRTAIE KAQAELRTYD DKPLLFYLLQ GGNPLDFKFG IATSHSVQST SLTDQQAEHF VNSEVKDSFA 0101: LTASPHGDSV ESSGRPGVPT ISEPNTADNL LLFDSENKSV EGERNLRHPN RQNRTSESER SSKAHTNQNT KETEDSAIFR PYARRNRSKI SRDPARSSST 0201: DLVQNRGGLA TSISIRRGSV EGKGCIPEAA NQKDMHTTSV SCPVFANSNG NIVPKNRVSS NSLNTKVDGE PVVRESTAGS KTSLLKDEAD ISYSKSSAYL 0301: PVGESGLAGE KAQLVSTGGS PKAATIAGQK NSSTQLNGLR DSTVEEESLT NRGATGTNGL ESESSHANNV EVNVDNERDL YKVDKLDSDE ISMQKTLRVE 0401: GLLDQTVGEM TKTKIEDETG QSTTIISECI PECEMQMKSV KIENQSHRST AEMQTKEKSS ETEKRLQDGL VVLENDSKVG SILSENPSST LCSGIPQASV 0501: DTSSCTVGNS LLSGTDIEAL KHQPSSDAVM LDTVKEDAIL EEARIIQAKK KRIAELSCGT APVEVREKSQ WDFVLEEMAW LANDFAQERL WKMTAATQIC 0601: HRVALTCQLR FEERNQHRKL KKIASVLSYA ILQFWSSVEA EVPGELEETS LGIVKETCQE SNCLNGIRCL AAGVKEYASR FLKYNNSSIS YHSAALSTPD 0701: NMCDPEILDI SMVDQLTEAS LFYSVPSGAM EVYLKSIESH LTRCESGSSM QEEVDTSAYD TAGDIGYNVT AFDEDEGETS TYYLPGAFES SRSFNISHKK 0801: RKNLMKSHSA RSYDLGDDLP YVNNTGGSNS SSLIVKRPDS NINAGSVPTR RVRTASRHRV VSPFGCATTG NLPVPSKTDA SSGDTSSFQD EYSSLHGGSA 0901: VQKGTEVESS VNFEKLLPYD MAETSGKPKK KKKTHQGSAY DQTWHLNPSV HVEQKDHWKK RPENNFDMNG LYGPHSAKKQ KTTKQLVENN FDMAIPHTGS 1001: IPSPAASQMS NMSNPNKSIK FIGGRDRGRK IKGLKISPGQ HGSGNPWSLF EDQALVVLVH DMGPNWELIS DAMNSTLKIK YIYRNPTECK DRHKILMDKT 1101: AGDGADSAED SGNSQSYPST LPGIPKGSAR QLFQRLQGPM EEDTLKSHFE KICLIGKKLH YRKTQNDGRD PKQIVPVHNS QVMALSQVFP NNLNGGVLTP 1201: LDVCDASTSG QDVFSLENPG LPMLNQGTPV LPTSGAHPST PGSSGVVLSN NLPTTSGLQS ASVRDGRFNV PRGSLPLDEQ HRLQQFNQTL SGRNLQQPSL 1301: STPAAVSGSD RGHRMVPGGN AMGVSGMNRN TPMSRPGFQG MASAAMPNTG NMHTSGMVGI PNTGNIHSGG GASQGNSMIR PREAVQHMMR AAQGNSPGIP 1401: AFSNLSSGFT NQTTPVQAYP GHLSQQHQMS PQSHVLGNSH HPHLQSPSQA TGAQQEAFAI RQRQIHQRYL QQQQQQFPAS GSMMPHVQQP QGSSVSSSSQ 1501: NSPQTQPPVS PQPLSMPPVS PSPNINAMAQ QKPQKSQLAL HGLGRSPQSG TSGVNNQAGK QRQRQLQQSA RQHPHQRQPT QGQQLNKQLK GMGRGNMIHQ 1601: NITVDQSHLN GLTMPQGNQA TEKGEIAVSV RPDQQSSVGT TTSTDLQSKP FVSPLSSNHS QQLPKSFPGA LSPSPQQQMQ LHSDNSIQGQ SSPATPCNIL 1701: STSSLSIAPA VAPSNHQHLL IHQKQRNQVQ STAQRVVQHN HLGNSELSKK SQAECMPRVP QSVTNTTQTA SMGTTKGMPQ ASNDLKNIKA VGSTAVPALE 1801: PPSCVASVQS TASKVVNNSN TDSAGNDPVS TPNQGLAQKH GIKGVTQRQQ QSLPSEEKRP KLPEKPTVQN QKHLASEEQP HLEEAQELSS SKPPDTKVE |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)