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AT3G24880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Helicase/SANT-associated, DNA binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Helicase/SANT-associated, DNA binding protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), HSA (InterPro:IPR006562), Homeodomain-like (InterPro:IPR009057), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Helicase/SANT-associated, DNA binding protein (TAIR:AT3G24870.1); Has 17312 Blast hits to 12172 proteins in 594 species: Archae - 4; Bacteria - 677; Metazoa - 8001; Fungi - 2909; Plants - 1838; Viruses - 51; Other Eukaryotes - 3832 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEQ8eggNOG:ENOG4112DFREMBL:AB028609EMBL:CP002686
EnsemblPlants:AT3G24880EnsemblPlants:AT3G24880.1entrez:822086Gene3D:1.10.10.60
GeneID:822086Genevisible:F4J7T3GO:GO:0003677GO:GO:0005634
GO:GO:0009909GO:GO:0035267GO:GO:0043981GO:GO:0048510
Gramene:AT3G24880.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF698InParanoid:F4J7T3
InterPro:IPR001005InterPro:IPR009057InterPro:IPR014012InterPro:IPR017877
iPTMnet:F4J7T3KEGG:ath:AT3G24880ncoils:CoilOMA:NKEHEDT
PaxDb:F4J7T3Pfam:F4J7T3Pfam:PF07529Pfam:PF13921
Pfscan:PS50090Pfscan:PS51204PRIDE:F4J7T3PRO:PR:F4J7T3
PROSITE:PS50090PROSITE:PS51204ProteinModelPortal:F4J7T3Proteomes:UP000006548
RefSeq:NP_189132.2SMART:SM00573SMART:SM00717SUPFAM:SSF46689
TAIR:AT3G24880UniGene:At.37452UniGene:At.70205UniProt:F4J7T3
Coordinates (TAIR10) chr3:-:9086457..9095537
Molecular Weight (calculated) 211679.00 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.70
Length 1957 amino acids
Sequence (TAIR10)
(BLAST)
0001: MHGSVSGYLL VNAEVDSMGG VIDSGGGIGV KTSPRRTAIE KAQAELRQEY DVREERRREL EFLEKGGNPL DFKFGIATSH SVQSTSLTDQ QAEHFVNSEV
0101: KDSFALTASP HGDSVESSGR PGVPTISEPN TADNLLLFDS ENKSVEGERN LRHPNRQNRT SESERSSKAH TNQNTKETED SAIFRPYARR NRSKISRDPA
0201: RSSSTDLVQN RGGLATSISI RRGSVEGKGC IPEAANQKDM HTTSVSCPVF ANSNGNIVPK NRVSSNSLNT KVDGEPVVRE STAGSKTSLL KDEADISYSK
0301: SSAYLPVGES GLAGEKAQLV STGGSPKAAT IAGQKNSSTQ LNGLRDSTVE EESLTNRGAT GTNGLESESS HANNVEVNVD NERDLYKVDK LDSDEISMQK
0401: TLRVEGLLDQ TVGEMTKTKI EDETGQSTTI ISECIPECEM QMKSVKIENQ SHRSTAEMQT KEKSSETEKR LQDGLVVLEN DSKVGSILSE NPSSTLCSGI
0501: PQASVDTSSC TVGNSLLSGT DIEALKHQPS SDAVMLDTVK EDAILEEARI IQAKKKRIAE LSCGTAPVEV REKSQWDFVL EEMAWLANDF AQERLWKMTA
0601: AAQICHRVAL TCQLRFEERN QHRKLKKIAS VLSNAILQFW SSVEAEVPGE LEETSLGIVK ETCQESNCLN GRRCLAAGVK EYASRFLKYN NSSISYHSAA
0701: PSTPDNMCDP EILDISMVDQ LTEASLFYSV PSGAMEVYLK SIESHLTRCE KSGSSMQEEV DTSAYDTAGD IGYNVTAFDE DEGETSTYYL PGAFESSRSF
0801: NISHKKRKNL MKSHSARSYD LGDDLPYVNN TGGSNSSSLM AKRPDSNINA GSVPTRRVRT ASRQRVVSPF GCATTGNLPV PSKTDASSGD TSSFQDEYSS
0901: LHGGSAVQKG TEVESSVNFE KLLPYDMAET SGRPKKKKKT HQGSAYDQTW HLDPSVHVEQ KDHWKKRPEN NFDMNGLYGP HSAKKQKTTK QLVENNFDMA
1001: IPHTGSIPSP AASQMSNMSN PNKSIKFIGG RDRGRKIKGL KISPGQHGSG NPWSLFEDQA LVVLVHDMGP NWELISDAMN STLKIKCIYR NPTECKDRHK
1101: ILMDKTAGDG ADSAEDSGNS QSYPSTLPGI PKGSARQLFQ RLQGPMEEDT LKSHFEKICL IGKKLHYRKT QSVIGVSVVS FVHGIQFSSC TGAGISQSLD
1201: IPGLHVSKYS CKSWLGFPEN DGRDSKQIVP VHNSQVMALS QVFPNNLNGG VLTPLDVCDA STSGQDVFSL ENPGLPMLNQ GTPVLPTSGA HPSTPGSSGV
1301: VLSNNLPTTS GLQSASVRDG RFNVPRGSLP LDEQHRLQQF NQTLSGRNLQ QPSLSTPAAV SGSDRGHRMV PGGNAMGVSG MNRNTPMSRP GFQGMASSAM
1401: PNTGSMLSSG MVEIPNTGNI HSGGGASQGN SMIRPREAVQ HMMRMQAAQG NSPGIPAFSN LSSGFTNQTT PVQAYPGHLS QQHQMSPQSH VLGNSHHPHL
1501: QSPSQATGAQ QEAFAIRQRQ IHQRYLQQQQ QQQQFPASGS MMPHVQQPQG SSVSSSPQNS PQTQPPVSPQ PLSMPPVSPS PNINAMAQQK PQKSQLALHG
1601: LGRSPQSGTS GVNNQAGKQR QRQLQQSARQ HPHQRQPTQG QQLNKQLKGM GRGNMIHQNI TVDQSHLNGL TMPQGNQATE KGEIAVPVRP DQQSSVGTTT
1701: STNLQSKPFV SPLSSNHSQQ LPKSFPGALP PSPQQQMQLH SDNSIQGQSS PATPCNILST SSPSIAPAVA PSNHQHLLIH QKQRNQVQST AQRVVQHNHL
1801: GNSELSKKSQ AERMPRVPQS VTNTTQTVSM GTTKGMPQAS NDLKNIKAVG STAVPALEPP SCVASVQITA SKVVNSSNTD SAGNDPVSTP NQGLAQKHGI
1901: KGVTQRQQQS LPSEEKRPKL PEKPTVQNQK HLASEEQPHL EEAQELSSSK PPDTKVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)