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AT3G19180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : paralog of ARC6
Curator
Summary (TAIR10)
Encodes a chloroplast division factor located in the plastid inner envelope with its N-terminus exposed to the stroma. PARC6 influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division.
Computational
Description (TAIR10)
paralog of ARC6 (PARC6); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G42480.1); Has 266 Blast hits to 205 proteins in 69 species: Archae - 0; Bacteria - 132; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
BioGrid:6785eggNOG:ENOG410IJJVeggNOG:ENOG410YAIPEMBL:AP000419EMBL:AY074283EMBL:CP002686EnsemblPlants:AT3G19180
EnsemblPlants:AT3G19180.1entrez:821452GeneID:821452GO:GO:0009507GO:GO:0009528GO:GO:0009706GO:GO:0010020
GO:GO:0016021GO:GO:0043572GO:GO:0043621hmmpanther:PTHR33925hmmpanther:PTHR33925:SF2HOGENOM:HOG000006302InParanoid:Q8VY16
IntAct:Q8VY16InterPro:IPR025344iPTMnet:Q8VY16KEGG:ath:AT3G19180ncoils:CoilOMA:TCYQLIGPaxDb:Q8VY16
Pfam:PF13355Pfam:Q8VY16PhylomeDB:Q8VY16PRIDE:Q8VY16PRO:PR:Q8VY16ProteinModelPortal:Q8VY16Proteomes:UP000006548
RefSeq:NP_001030725.1RefSeq:NP_188549.2STRING:3702.AT3G19180.1TAIR:AT3G19180tair10-symbols:ARC6Htair10-symbols:ATCDP1tair10-symbols:CDP1
tair10-symbols:PARC6UniGene:At.42679UniProt:Q8VY16
Coordinates (TAIR10) chr3:+:6632810..6636953
Molecular Weight (calculated) 90827.80 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.21
Length 819 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)