AT3G43610.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.826 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Spc97 / Spc98 family of spindle pole body (SBP) component | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: chloroplast, spindle pole, microtubule organizing center; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:15517772..15523927 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 137272.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 1207 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPVLATSLVS LKVEEPYLPP RNWESLPSQS GRFLPPTRSS ASSSSSSSFV SESSLVRLAL NALQGVESSL ISIEQLSSAF CSEPADRTFH KIPSLWHRLS 0101: STDALGQILR DIGCFGSLVF LLHKFVDHFT RLNLDVESAV EGQGSCKIGE NEEVNNKSCY TLVNQAFAIA VRRVLEGYIS GLDTLCASIE LRRSSNIVDG 0201: SDHGSSRLGS LTNVVHPKIT LLEVFLHTRE LRTQIEALAN ICDLYDIALS YCASPWECLI TEATTRFHGF YRGSDLLTYL YSQLQVADPT HSAMLKFLFL 0301: KTCEPYCEFI RSWMFKAELN DPHKEFIVEC RSESTSFSWN KPGISPLKSV RERGGLVPCF LNGFLEPIVR AGQQLQVITK LLELCNLPAS GHKNYTDLLP 0401: CWTYFSTTSP GYPSPITFSK LHIEVMIKKR DDYYRMMQEK LGDFSEKFEV FPGQVPGAIS LPISYGDGDK NSIYFTLDES LLIPSTMAID LTRDQSGSDS 0501: DDQNTEDRWF SEIDASCSSE CSSTRDSLEA SEVGLLDSQS TLVGPPPNYL SALRFSVASN GNCNQNLVQH SDSGYIDNNL VRQGEKADIN HQWVDTKPEE 0601: STGVCEDDKF RGPLLIKSWP LGGLPRNPFC VDKKSADDDS EDPRNYSGAR MEQRHLMNTD ERKLFLNNIS TSGSCSKHER RHDVLENCLS SKLDLMKDTK 0701: VNYPNDVLSM NPLVRCDFLR KHGNTNKRNQ GKSLPWFDFS AVDDPSKTCI TRIPVRVPID FQKESHSPQT DRKSHRHANQ ERFDVEDPKV SSSQLSSGIK 0801: GCAEEKKSNA FGGGRWESML RRSNNPETSA FSDRRQDSSG TFELPLDFVI DKCLLQEIHL QYNFVSKLAI KLLEEGFGLQ EHLLALRRYH FMELADWADV 0901: FVVSLWHHKW LVTEADKRIA EIQGFLESSI QRSSCERDIC KDRIFLYKRQ GTMHIPPSTI GVRSFDFLRL GYRVDWPISI ILTCDALTAY ADVFSFLVQV 1001: KLAAYVLTDV WCSLKDVRHM MHEKKEKILK QELRWLNILM KLRHQVNHFV TALQQYVHSE LSHVSWSKFL HSLKNKVKDM MDLESVHMAY LSEALRICFL 1101: SDETQIISNI IENILQCALD FRSCLPRGIQ STDRVPNDSW TKTLGINTSQ VMMVKQNFDK ELKELHKCHL RSPKHGKYGL SRFWDYLNFN LYYSDILHDS 1201: NIFSLIP |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)