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AT3G12770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mitochondrial editing factor 22
Curator
Summary (TAIR10)
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
Computational
Description (TAIR10)
mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB024033EMBL:AK221461EMBL:CP002686EnsemblPlants:AT3G12770EnsemblPlants:AT3G12770.1
entrez:820459Gene3D:1.25.40.10GeneID:820459Genevisible:Q9LTV8GO:GO:0008270Gramene:AT3G12770.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF477HOGENOM:HOG000237570InParanoid:Q9LTV8IntAct:Q9LTV8InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
iPTMnet:Q9LTV8KEGG:ath:AT3G12770OMA:NTGHYVQPaxDb:Q9LTV8Pfam:PF01535Pfam:PF13041Pfam:PF14432
Pfam:Q9LTV8Pfscan:PS51375PhylomeDB:Q9LTV8PRIDE:Q9LTV8PRO:PR:Q9LTV8PROSITE:PS51375ProteinModelPortal:Q9LTV8
Proteomes:UP000006548RefSeq:NP_187883.2SMR:Q9LTV8STRING:3702.AT3G12770.1SUPFAM:SSF48452TAIR:AT3G12770tair10-symbols:MEF22
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.5676UniGene:At.71666UniProt:Q9LTV8
Coordinates (TAIR10) chr3:-:4057027..4059193
Molecular Weight (calculated) 77939.90 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.09
Length 694 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEASCLASP LLYTNSGIHS DSFYASLIDS ATHKAQLKQI HARLLVLGLQ FSGFLITKLI HASSSFGDIT FARQVFDDLP RPQIFPWNAI IRGYSRNNHF
101: QDALLMYSNM QLARVSPDSF TFPHLLKACS GLSHLQMGRF VHAQVFRLGF DADVFVQNGL IALYAKCRRL GSARTVFEGL PLPERTIVSW TAIVSAYAQN
201: GEPMEALEIF SQMRKMDVKP DWVALVSVLN AFTCLQDLKQ GRSIHASVVK MGLEIEPDLL ISLNTMYAKC GQVATAKILF DKMKSPNLIL WNAMISGYAK
301: NGYAREAIDM FHEMINKDVR PDTISITSAI SACAQVGSLE QARSMYEYVG RSDYRDDVFI SSALIDMFAK CGSVEGARLV FDRTLDRDVV VWSAMIVGYG
401: LHGRAREAIS LYRAMERGGV HPNDVTFLGL LMACNHSGMV REGWWFFNRM ADHKINPQQQ HYACVIDLLG RAGHLDQAYE VIKCMPVQPG VTVWGALLSA
501: CKKHRHVELG EYAAQQLFSI DPSNTGHYVQ LSNLYAAARL WDRVAEVRVR MKEKGLNKDV GCSWVEVRGR LEAFRVGDKS HPRYEEIERQ VEWIESRLKE
601: GGFVANKDAS LHDLNDEEAE ETLCSHSERI AIAYGLISTP QGTPLRITKN LRACVNCHAA TKLISKLVDR EIVVRDTNRF HHFKDGVCSC GDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)