AT3G09710.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : IQ-domain 1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
IQ-domain 1 (IQD1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: glucosinolate biosynthetic process, defense response; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 2 (TAIR:AT5G03040.3). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2976834..2978900 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52226.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 11.09 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||
| Length | 468 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR 101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKLFMR 201: LFKFIVVSSD NGGNWNYSNQ SKEQVEAGML HKYEATMRRE RALAYAFTHQ QNLKSFSKTA NPMFMDPSNP TWGWSWLERW MAGRPWESSE KEQNTTNNDN 301: SSVKNSTNRN SQGGETAKSS NRNKLNSSTK PNTPSASSTA TRNPRKKRPI PSSIKSKSSD DEAKSSERNR RPSIARPSVS DDETLSSSTA RRSSNLIPTT 401: KSARGKPKSQ TSSRVAVTTS TTEESSILPE KAPAKKRLST SASPAPKPRR SSAPPKVEKG VLKAERTP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)