AT3G06820.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.771 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Mov34/MPN/PAD-1 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Mov34/MPN/PAD-1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT1G80210.1); Has 1006 Blast hits to 928 proteins in 230 species: Archae - 0; Bacteria - 7; Metazoa - 464; Fungi - 225; Plants - 185; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:2151027..2153264 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44414.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLTCVNMSE DVWLTCLTHA LSTETEEIMG LLLGDIEYSK NGESATAMIW GASPQPRSDR QKDRVETNPE QLAAASAQAD RMTISTGRTT RVIGWYHSHP 101: HITVLPSHVD VRTQAMYQLL DSGFIGLIFS CFSEDANKVG RIQVIAFQSS DGKPNSIPKS MSLVLANKDS VIDIESSSSS SDSIYQRSSS SKPELDTIDT 201: ATTSGSKGGG RVSDFGPFFT NNIEANITGR DETHKSGNLS STTIGIDSMD MSESMQEAML RSNLDTSGAG YVRKEVPLHV LPTSSLLPVN SPLASFKSLQ 301: RVLYEEERAA YYQSVQQNMR DGRVHPLAFI HNTSTYQASM CKLIEYCLSP AINALQDRQK ENKIRLAMLM DEAEVLEAQK LKGAETSRRP SHLVHGSGSR 401: SRRGS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)