AT3G06530.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.475 golgi 0.142 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2022596..2033637 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 245187.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.19 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||
| Length | 2188 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSSIVSQLQ ALKSVLQADT EPSKRPFTRP SILFSPKEAA DFDIESIYEL GLKGLEVLGN KDERFKNYMN DLFSHKSKEI DRELLGKEEN ARIDSSISSY 0101: LRLLSGYLQF RASLETLEYL IRRYKIHIYN LEDVVLCALP YHDTHAFVRI VQLLSTGNSK WKFLDGVKNS GAPPPRSVIV QQCIRDKQVL EALCDYASRT 0201: KKYQPSKPVV SFSTAVVVGV LGSVPTVDGD IVKTILPFVD SGLQSGVKGC LDQQAGALMV VGMLANRAVL NTNLIKRLMR SIIDIGREHA KESSDPHSLR 0301: LSLMALINFV QLQSVDLIPR KALDLFNEIR DISGVLLGLS KEFNIKRFLA VLLDSLLFYS SSDDKCCEVL ASIIETVPVS NLVDHLISKV FSLCMTQYQK 0401: NSDFRSSTSV VGSWAKKFLV VVSKKYPAEL RAAVPKFLEA TEVQSKKEDL KLEMLSCMLD GNSDMSHPFV DSKLWFRLHH PRAAVRCAAL SSLNGVLKDD 0501: SSKAENLVTI QDAILRQLWD DDLAVVQAAL SFDKLPNIIT SSGLLDALLH VVKRCVGILV SGVSHNVQLA VDVVALSLKI AVSSFGNQTD STEKVTSAMF 0601: PFLLIQPKTW NLNLLVLKLG KDVNWPLFKN LAADDGMKKL PDIMSTNLSS ISMDIINDLG EALSLDPDER RIELIERACN YKLSEVLETC SNIKCSEQDR 0701: NKLQKGLLIR ESVSALNIDV INKLVEAFMM HPADYIQWLT VSCRDSTLSK TLFYMILMHS LQKMNSSSGK LLSITEWEEL EVEVDVSLKE LSKSNCQELL 0801: YQLLDTSDFT ALNSKVLICL FWKLGESFIK LEPAHDASVL NKRLSSGLED LFFFFATTRL RHVFKEHLHF RVREAKVCPV LFLSRLISRE DVPPLVQIES 0901: LRCFSYLCSS GNNEWLIQVF SSFPVLLVPM SSDNQDVKAA AINCIEALFN LRAAIYGSSF DELLGMIVQQ RRLILSDNKF FASYLTSLLS STTNDLLVPV 1001: GLQKRFDQST KENILSVILL CAEDLPAYGK LRVLSLLKDL GIMLMRDEIV KLLSQLLDKR SQYYYKLDKT SQPLSDTEVD LLCLLLECSM MRTSSFKGQS 1101: LDDHILSALN VDCMASERPA VISPCLTILE KLSNRFYDEL QTDVQIRFFH KLVSMFRSSN GSIQNGAKEA VLRLKLSSST VVLALDRITQ QDTLVIGSLS 1201: KKKKQKKNSK SCPEEDINSE EFRSGEKALS FIASLLDMLL LKKDLTHRES LIRPLFKLLQ RSMSKEWVKI AFSIEETSLQ PPQDVRETTP TFISSIQQTL 1301: LLILKDIFDS LNMNPLKAEV ANEINVKMLV ELAHSSNDGV TRNHIFSLFT AIVKFVPDKV LDHIISILTL VGESTVTQID SHSKSIFEGF ISMVIPFWLS 1401: KTKSEEQLLQ IFVKVLPDIV EHRRRSIVAY LLGVIGERNG LPALLVLLFK SLISRKDSAW LGNANVSESF ASIVKKEWEY SFAMEICEQY SSSTWLSSLV 1501: ILLQTISKDS KQCFLQMRLV LEFVFQKLQD PEFAFAVSLE PRNNVSVGIQ QELQELMKCC ICLLQAIDAK KEKDVTSSVR NEIRMRIHDV LMTVTGAMDL 1601: SIYFRVVTSL LQQQTDYNGT KKVLGLISER AKDTSSSKMK HKRKISNQKG RNSWLNLDEV AVDSFGKMCE EIVHLINATD DESGVPVKRA AISTLEVLAG 1701: RFPSGHPIFR KCLAAVAECI SSKNLGVSSS CLRTTGALIN VLGPKALIEL PCIMKNLVKQ SLEVSFASQS GRNATAEEQL LMLSVLVTLE AVIDKLGGFL 1801: NPHLGDIMKI MVLHPEYVSD FDKNLKSKAN AIRRLLTDKI PVRLTLQPLL RIYNEAVSSG NASLVIAFNM LEDLVVKMDR SSIVSSHGKI FDQCLVALDI 1901: RRLNPAAIQN IDDAERSVTS AMVALTKKLT ESEFRPLFIR SIDWAESDVV DGSGSENKSI DRAISFYGLV DRLCESHRSI FVPYFKYVLD GIVAHLTTAE 2001: ASVSTRKKKK AKIQQTSDSI QPKSWHLRAL VLSCLKNCFL HDTGSLKFLD TNNFQVLLKP IVSQLVVEPP SSLKEHPHVP SVDEVDDLLV SCIGQMAVAS 2101: GSDLLWKPLN HEVLMQTRSE SVRSRMLSLR SVKQMLDNLK EEYLVLLAET IPFLAELLED VELSVKSLAQ DIIKQMEEMS GESLAEYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)