suba logo
AT2G48060.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.884
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YVF6eggNOG:KOG1893EMBL:AC006072EMBL:AY461629EMBL:AY461630EMBL:CP002685EnsemblPlants:AT2G48060
EnsemblPlants:AT2G48060.1entrez:819418GeneID:819418Genevisible:F4IN58GO:GO:0008381GO:GO:0016021Gramene:AT2G48060.1
hmmpanther:PTHR13167hmmpanther:PTHR13167:SF45HOGENOM:HOG000029760InParanoid:F4IN58InterPro:IPR027272InterPro:IPR031334KEGG:ath:AT2G48060
ncoils:CoilOMA:VHEQEKKPANTHER:PTHR13167PaxDb:F4IN58Pfam:F4IN58Pfam:PF12166PIR:F84922
PIR:G84922PIR:H84922PRIDE:F4IN58PRO:PR:F4IN58ProteinModelPortal:F4IN58Proteomes:UP000006548RefSeq:NP_182327.6
STRING:3702.AT2G48060.1TAIR:AT2G48060TCDB:1.A.75.1.4TMHMM:TMhelixUniGene:At.36294UniProt:F4IN58
Coordinates (TAIR10) chr2:-:19651560..19662386
Molecular Weight (calculated) 282290.00 Da
IEP (calculated) 7.59
GRAVY (calculated) 0.20
Length 2462 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASFLVGFLL PSLLLAAALI NWSVISFLDL IAFLLVHYIA PEIGYRFQRR HWLLWPIFIF SFAVFLAQVV YLVIWAALGQ DWDTPDTGWM RVIGFMILKS
0101: WRNPTVMYFL ALQLLTSLVA LADIYSSRFG FARWRDTWWS HFSGIFEHLG SHLRVASCLL LPAVQLAVGI CNPSWVSLPF FIGSCAGLVD WSLTSNVSGL
0201: FRWWRVLYIY AGFNIVLLYL YQLPINFSDM IRWIASFIGL FRISLETEGP DICSGLFLVL FYIMLSYVRS DLEDMDFIMS TSENNLAERL LPPKYSFFIR
0301: ESRAGVRHTN VLLRGAVFKT FSINFFTYGF PVSLFALSFW SFHFASLCAF GLLAYVGYII YAFPSLFQLH RLNGLLLVFI LLWAVSTYIF NVAFSFLNTK
0401: VGKFGLGMLV ALGNLVNNSV FLYLSEESSR SSNERSYVEA DEETKVLVVA TIAWGLRKCS RAIMLALIFL IAMKPGFFHA VYVIFFLMYL LSHNINRKIR
0501: KSLILLCEVH FALLYILEID LVSNSLKQEG SASREVLFQL GLLRSESSWD FLEIALLACF CAIHNHGFEV LFSFSAIVRH TPSPPIGFSI LKAGLNKSVL
0601: LSVYSSPSSS YSQDNTTYER HIASFLSAIG QKFLSMYRSC GTYIAFITIL ISVYLVKPNY VSFGYIFLLL LWITGRQLFE ETKRRLWFPL KAYAVLVFMF
0701: IYCLSSFVSL QLWLSGFIDL YFYLGYNSKA PLLDNVWESL AVLIVMQLYS YERRQSGHYI PGQSSLLHPG VFGFFERFLA WHGQKILFAA LFYASLSPIS
0801: VFGFVYLLGL VICTTFPKSS SIPSKSFLIY TGFLVSAEYL FQLWGMQAQM FPGQKYAELS FYLGLRVYEP GFWGIESGLR GKVLVVAACT LQYNVFRWLE
0901: RTSGLTVIKG KYEEPCPLFV SAEDTTASVS SSNGENPSST DHASISMKQG EATSNSWPFF SPRGNQGAGF LHPKTGGSES GSSRKFSFGH FWGSIKESHR
1001: WNRRRILALK KERFETQKNL LKIYLKFWIE NMFNLYGLEI NMIALLLASF ALLNAISMVY IALLAACVLL RRRVIQKLWP VVVFLFASIL AIEYVATWNS
1101: FLPSDQAPSE TSVHCHDCWS IAALYFKFCR ECWLGVRVDD PRTLISYFVV FMLACFKLRA DHISSFSESS TYHQMKSQRK NSFVWRDLSF ETKSMWTVLD
1201: YLRLYCYVHL LDVVLILILI TGTLEYDILH LGYLAFALVF ARMRLEILKK KNKIFRFLRV YNFVLIIFSL AYQSPFVGNF NDGKCETVDY IYEVIGFYKY
1301: DYGFRITARS ALVEIIIFML VSLQSYMFSS QEFDYVSRYL EAEQIGAIVR EQEKKAARKT EQLQQIREAE EKKRQRNLQV EKMKSEMLNL RVQLHRMNSD
1401: SNFGVASPRT EGLRRRKSPY LIPDSGAASP EIDGVVHRKE EQPIDEDSQY PFEAHEFPVS TTPEALDSPE YSFGASPCEI TEVQQDLDVM SMERERKQKS
1501: EGKENPLISA VQLIGDGVSQ VQFIGNQAVN NLVNFLNISP ENSDTNEQSS VDDEVYDEME SQKRKHTPFE RSTSLQSDRS SDGTSFQIGR IFRHIWSRMQ
1601: SNNDIVCYCC FIIAFLWNFS LLSMVYLAAL FLYALCVHTG PTHIFWVIML MYTEIYILLQ YLYQIIIQHC GLSIDAPLLH ELGFPTQRIK SSFVVSSLPL
1701: FLIYIFTLIQ SSITVKDGDW VPSADFTSRR NARGSQKDLT RIRLSQRILD VFKKLRDSAK LVIRSIYRYW ISLTRGAESP PYFVQVTMDV HMWPEDGIQP
1801: ERVECRMNQL LRLVHNERCE KGNPDLCPYS SRVHVQSIER STETPNEALV VLEVEYASPT NGCSSAEWYK SLTPASDVAK EIRKAQHSGL GEGTGFPYPI
1901: LSVIGGGKRD TDLYAYIFGA DLIVFFLVAI FYQSVIKNKS EFIDVYQLED QFPFDFVIIL MVIFFLIVVD RVIYLCSFAT GKVVYYLFSL ILFTYAVTEY
2001: AWSIYPTQQH AAGLALRIIF LAKAMSLALQ AIQIRYGLPH KSTLYRQFLT SEVSRINYYG YRLYRALPFL YELRCVLDWS CTATSLTMYD WLKLEDVNAS
2101: LYLVKCDTVL NRATHKHGEK QTKMTKCCNG ICLFFILLCV IWAPMLMYSS GNPTNIANPI KDASVQIDLK TVGGKLTLYQ TTLCERISGD NIDLGLDLGS
2201: QSFLPTYNKN DIQLICCQAD ASVLWLVPDT VVTRFIQSLD WDTDMDITFT WVLNRDRPKG KETVKYERSV DPLDLPKRSD IQMVLNGSMD GFRVHNLYPK
2301: FFRVTGSGDV RSFEDQTDEV SADILINHAN FKWWWSFHNL KASENISACE GMDGPVAIIM SEETPPQGFL GDTLSKFSIW GLYITFVLAV GRFIRLQCSD
2401: LRMRIPYENL PSCDRLIAIC EDLYAARAEG ELGVEEVLYW TLVKIYRSPH MLLEYTKLDY DA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)