AT2G42700.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.697 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17778464..17782034 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95026.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||
| Length | 867 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALIDVAISC LNSIREIEED VKDAIVYIDA GCTESFQFVG AFPLFLELGA RAVCSLENMT SLDAVADWNS KSDCAKRIVI MTSRLLNDAH RYMLRCLSTH 101: EGVQRCTVFT SISEGSHSAI PDSPLGPDAY REYETLLVQD YNEHTKKSDK ISKDKGVSKF SSALESLTME PIESENVDIS SGGAQGLVVS VHHFPLIICP 201: FTPRAFVLPS QGSVAEASLS RQHEDSLSFG LPPISTGSMS DTDDVPPGAT LTAHFLYQLA LKMELKLEIF SLGDQSKNVG KILTDMSSVY DVARRKRSAG 301: LLLVDRTLDL ITPCCHGDSL FDRIFSSLPR AERFSSQAQL KQGVPSINRP SLDVQVPLGE LLNEEPSKIR DSGLPEGIEA FLRGWDSYTS APQNVGLFNE 401: CDKKSTTNWT ELLNGSLVAT ECFRGTPYLE AMIDRKTKDG SVLVKKWLQE ALRRENISVN VRARPGYATK PELQAMIKAL SQSQSSLLKN KGIIQLGAAT 501: AAALDESQSA KWDTFSSAEM MLNVSAGDTS QGLAAQISDL INKSAVAELQ AKKNEKPDSS SRGLLSFRDA LLLTIVGYIL AGENFPTSGS GGPFSWQEEH 601: FLKEAIVDAV LENPSAGNLK FLNGLTEELE GRLNRLKSEE TKEIPSDDQL DIDALDDDPW GKWGDEEEEE VDNSKADESY DDMQLKLDLR DRVDSLFRFL 701: HKLSSLRTRN LPLREGSLAS ESSFPGEPSG NKGLVYRLIT KVLSKQEIPG LEYHSSTVGR FIKSGFGRFG LGQAKPSLAD QSVILVFVIG GINGIEVSFF 801: ITKVTSHSRC RAIFFITVYV SSIVKVLEAQ EAVSESGRPD INLVIGGTTL LTPDDMFELL LGQFSHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)