AT2G17970.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.2); Has 198 Blast hits to 198 proteins in 53 species: Archae - 0; Bacteria - 4; Metazoa - 53; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:7819116..7820787 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49030.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||
| Length | 433 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSERASNNV DDNYDEKSEN GEDCDNHSLG SWKGSEIVFG SFPEDFSSVL QSRPAVVETA SPRMRWADMA QEDEFDEEEE EEEEERDSSR KGFDASSMKT 101: PEKPKLSRDQ RENLRLINVK RKKDFICLER VKGKIVNVLD GLELHTGVFS AVEQKRIVDQ VYQLQEKGRR GELKKRTFTA PHKWMRGKGR ETIQFGCCYN 201: YAPDRAGNPP GILQREEVDP LPHLFKVIIR KLIKWHVLPP TCVPDSCIVN IYDEGDCIPP HIDNHDFLRP FCTISFLSEC DILFGSNLKV EGPGDFSGSY 301: SIPLPVGSVL VLNGNGADVA KHCVPAVPTK RISITFRKMD ESKRPVWFTP EPDLQGIEPL PLDLNRSGST SRFSRLNNHN GTNQRGHGRR GGGNGYDSRG 401: YYNPERSSEH NDSGDWPSSQ RRGMPRPSRR NYG |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)