AT1G72550.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA synthetase beta subunit family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tRNA synthetase beta subunit family protein; FUNCTIONS IN: RNA binding, phenylalanine-tRNA ligase activity, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding domain (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146); Has 5993 Blast hits to 5980 proteins in 2451 species: Archae - 257; Bacteria - 4083; Metazoa - 257; Fungi - 153; Plants - 58; Viruses - 0; Other Eukaryotes - 1185 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27319999..27323908 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65963.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 584 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPTISVGRDR LFAALGESYT QEKFEELCFS FGIELDDVTT EKAIIRKEKH IDEEADDDEE IIYKIEIPAN RPDLLCLEGL AQSLRVFIEK QEIPTYTLAD 101: ISKDKILQMN VKPETSKIRP FVVCAVLRGV TFDEARYNSF IDLQDKLHQN ICRRRSLVAI GTHDLDTLQG PFTYEALPPT DINFVPLKQT KSFRADELIE 201: FYKSDMKLKK FLHIIENSPV FPVLYDSKRT VLSLPPIING AHSAITLQTK NVFIECTATD LTKAKIVLNT MVTTFSEFCA RKFEIEPVEV TYDDGKSYIY 301: PDLAVYDMEV PLSFITDSIG VSLKVEQVTS LLTRMQLQAE QAKSSDNQCA IKVHVPPSRS DVLHPCDVME DVAIAYGFNN IPTRKPASIK PLTLNELTDL 401: LRIEIAMCVY TEVVTWLLCS HKENFAMLNR EDVNSAVIVG NPRSADFEAM RRALMPGLLK TVGHNNKYPK PIKIFEISDV VMLDESKDVG ASNRRHLAAL 501: YCGATSGFEL IHGLVDRIME VMAIPFLTIH ENNVPINEKD GYYVKLSQEP EFLPGRQASI IVRGKHIGNF GIVHPEFPSG FEQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)