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AT1G72480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lung seven transmembrane receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lung seven transmembrane receptor family protein; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT2G01070.1); Has 596 Blast hits to 594 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 236; Fungi - 150; Plants - 154; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS1QeggNOG:KOG2568EMBL:AC016529EMBL:CP002684EnsemblPlants:AT1G72480EnsemblPlants:AT1G72480.1entrez:843580
GeneID:843580GO:GO:0005794GO:GO:0016021Gramene:AT1G72480.1hmmpanther:PTHR21229hmmpanther:PTHR21229:SF15HOGENOM:HOG000242452
InterPro:IPR009637KEGG:ath:AT1G72480OMA:TVITIWAPANTHER:PTHR21229Pfam:PF06814PhylomeDB:Q9C9E6PIR:A96749
Proteomes:UP000006548RefSeq:NP_177392.1STRING:3702.AT1G72480.1TAIR:AT1G72480TMHMM:TMhelixUniGene:At.35093UniProt:Q9C9E6
Coordinates (TAIR10) chr1:-:27286304..27288339
Molecular Weight (calculated) 57448.50 Da
IEP (calculated) 6.32
GRAVY (calculated) 0.17
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLHLLLLLC LSSSLKVQAS VHEYRSERFV SKGNAFVFHG GSEGIYSSSP SDNFTSDSDS VSFIRFEKIK FQRPEEVSNR SSLSIHAVVF EVEDRENIGG
101: SAYGGQRAVC CTSDLAKLGV CSHGDVIYRP SAKDSGWPQV FGVSLAENEF SVILPTRSIQ VTRTGMYNLY FIHCDSDLKD LVVEGKTIWK NPTGYLPGRM
201: APLMYFYGFM SLAFVLLGIF WFSQCARFWR EVLPLQNCLT LVITLGMCEM ALWYFDYAEF NETGIRPTVI TIWAVTFGSI KRTSARIIIL MVSMGYGVVR
301: PTLGGFTSKV IMLGVTFFIA SEILELMENV GAVSDLSGKA RLFFVLPVAI LDAFFIIWIF KSLSATFKKL QTRRLLVKLD IYRKFTNALA VDILVSLGWI
401: CYELYFKSKD VYNEHWQNAW IIPAFWQLLS FSLLIVICSL WAPSQNSTRY AFSGSSGDTS AEFEKDDYTL TLIKPSPIPS HEVKNLSETR LLPADEGEPE
501: KDLEEDKRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)