AT1G71240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF639) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 140 Blast hits to 137 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26855489..26859599 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92880.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.88 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||
| Length | 824 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQRVGALKR LKLSSATPDF PIGFRCDGVR VHRRCSFSRN CASNRKPRLR IVAQKKWKLN DIDTNVVQER FSQWVSKSQK ILSDVTSPLK KKSQSLKKID 101: LEDQQDFEDL EELLTVEQTV RSDTPKGFLS FDAIISIEQF SSRMNGITGK KMQDIFETIV SPALSTDARY LVEYCCFRFL SRDSSEFHPC LKEPAFQRLI 201: FITMLAWANP YCKERNARND ASGKPSFQGR FIGEEAFIRI APAISGLADR ATVHNLFKAL ATATDQKGIS LEIWLAYIQE LVKIHEGRKS HQTTDFPQLS 301: SERLLCMAAN RKGPVLKWEN NVAWPGKLTL TDKALYFEPV DIKGSKGVLR LDLAGDKSTV EKAKVGPLGF SLFDSAVSVS SGPGLATWVL EFVDLGGELR 401: RDVWHAIISE VIALHTFLRE FGPGEGDKSL YQVFGAKKGK EKAIASASNC IARLQALQYM RNLPDDPIKL VQFSFLQQVA YGDIVCQTLA VNFWGGPLLT 501: KVSDKRGDIA RASRESYETF DNVSDLDGSV YLKRWMRSPS WGSTASMNFW KNSSLRQGLV LSKHLAVADL TLVERATETC RQKYKVVEKT QATIDAATIK 601: GIPSNIDLFK ELILPLSITA TEFEKLRCWE EPYMTVSFLA FASTIIFRNL LQYVLPVSLI FLATGMLTLK GLRRQGRLGR LFGIISIRDQ PSSNTIQKII 701: AVKDAMQNLE SYLQKVNVVL LKLRTIVLSG HPQITTEVAL AMLSIATVLV IVPFKYVLAF VLYDQFTREL EFRKEMVKKF NAFLRERWEM VPAAPVIVLP 801: FVNEESTPAT QENKQLRKPT PRGD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)