AT1G55250.3
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : histone mono-ubiquitination 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
histone mono-ubiquitination 2 (HUB2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: histone mono-ubiquitination 1 (TAIR:AT2G44950.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:20607214..20612302 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103226.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||
| Length | 899 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL 101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA 201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK 301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN 401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSAK 501: TLSNLQSYEQ KGLEDKCAKQ MAEIKSLKAL IEKLLKEKLQ LQNLASICTR ECNDDRGLAE IKDSQRKAQA QAEELKNVLD EHFLELRVKA AHETESACQE 601: RLATAKAEIA ELRTQLDLSE REVLELKEGI KVKEQEAEAS IAEMETIGQA YEDMQTQNQH LLQQVAERDD YNIKLVSESV KTKHAYNTHL SEKQVMEKQL 701: HQVNASVENF KARIAHNEEQ MKGCFSEAYK LIQEDRHLVI SLETTKWEVA DADKEFRWLK SAVSSSEKEY EQISRRTDDI KLELDDERRE KKKLEEELME 801: LNKELEELGS ESVEAAIVRL QEEVKNCKNI LKCGVCFDRP KERISTTAFC FKHYLQVVIV KCYHLFCQQC IQRSLEIRHR KCPGCGTAFG QNDVRLVKM |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)