AT1G16710.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : histone acetyltransferase of the CBP family 12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
histone acetyltransferase of the CBP family 12 (HAC12); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity; INVOLVED IN: flower development, regulation of transcription, DNA-dependent, protein amino acid acetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:5714692..5721782 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 187102.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1677 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNVQAHMSGQ RSGQVPNQGT VPQNNGNSQM QNLVGSNGAA TAVTGAGAAT GSGTGVRPSR NIVGAMDHDI MKLRQYMQTL VFNMLQQRQP SPADAASKAK 0101: YMDVARRLEE GLFKMAVTKE DYMNRSTLES RITSLIKGRQ INNYNQRHAN SSSVGTMIPT PGLSQTAGNP NLMVTSSVDA TIVGNTNITS TALNTGNPLI 0201: AGGMHGGSFV KHSSRNFSLG SGGSMTSMGA QRSTAQMIPT PGFVNSVTNN NSGGFSAEPT IVPQSQQQQQ RQHTGGQNSH MLSNHMAAGV RPDMQSKPSG 0301: AANSSVNGDV GANEKIVDSG SSYTNASKKL QQGEGYSTTN PDPFDGAITS AGTGTKAHNI NTASFQPVSR VNSSLSHQQQ FQQPPNRFQQ QPNQIQQQQQ 0401: QFLNQRKLKQ QTPQQHRLIS NDGLGKTQVD SDMVTKVKCE PGMENKSQAP QSQASERFQL SQLQNQYQNS GEDCQADAQL LPVESQSDIC TSLPQNSQQI 0501: QQMMHPQNIG SDSSNSFSNL AVGVKSESSP QGQWPSKSQE NTLMSNAISS GKHIQEDFRQ RITGMDEAQP NNLTEGSVIG QNHTSTISES HNLQNSIGTT 0601: CRYGNVSHDP KFKNQQRWLL FLRHARSCKP PGGRCQDQNC VTVQKLWSHM DNCADPQCLY PRCRHTKALI GHYKNCKDPR CPVCVPVKTY QQQANVRALA 0701: RLKNESSAVG SVNRSVVSND SLSANAGAVS GTPRCADTLD NLQPSLKRLK VEQSFQPVVP KTESCKSSIV STTEADLSQD AERKDHRPLK SETMEVKVEI 0801: PDNSVQAGFG IKETKSEPFE NVPKPKPVSE PGKHGLSGDS PKQENIKMKK EPGWPKKEPG CPKKEELVES PELTSKSRKP KIKGVSLTEL FTPEQVREHI 0901: RGLRQWVGQS KAKAEKNQAM ENSMSENSCQ LCAVEKLTFE PPPIYCTPCG ARIKRNAMYY TVGGGETRHY FCIPCYNESR GDTILAEGTS MPKAKLEKKK 1001: NDEEIEESWV QCDKCQAWQH QICALFNGRR NDGGQAEYTC PYCYVIDVEQ NERKPLLQSA VLGAKDLPRT ILSDHIEQRL FKRLKQERTE RARVQGTSYD 1101: EIPTVESLVV RVVSSVDKKL EVKSRFLEIF REDNFPTEFP YKSKVVLLFQ KIEGVEVCLF GMYVQEFGSE CSNPNQRRVY LSYLDSVKYF RPDIKSANGE 1201: ALRTFVYHEI LIGYLEYCKL RGFTSCYIWA CPPLKGEDYI LYCHPEIQKT PKSDKLREWY LAMLRKAAKE GIVAETTNLY DHFFLQTGEC RAKVTAARLP 1301: YFDGDYWPGA AEDIISQMSQ EDDGRKGNKK GILKKPITKR ALKASGQSDF SGNASKDLLL MHKLGETIHP MKEDFIMVHL QHSCTHCCTL MVTGNRWVCS 1401: QCKDFQLCDG CYEAEQKRED RERHPVNQKD KHNIFPVEIA DIPTDTKDRD EILESEFFDT RQAFLSLCQG NHYQYDTLRR AKHSSMMVLY HLHNPTAPAF 1501: VTTCNVCHLD IESGLGWRCE VCPDYDVCNA CYKKEGCINH PHKLTTHPSL ADQNAQNKEA RQLRVLQLRK MLDLLVHASQ CRSPVCLYPN CRKVKGLFRH 1601: GLRCKVRASG GCVLCKKMWY LLQLHARACK ESECDVPRCG DLKEHLRRLQ QQSDSRRRAA VMEMMRQRAA EVAGTSG |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)