AT1G09060.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2921235..2925254 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107236.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 944 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQVNFDETCD SVIRMNANEQ TRSANGIGNG NGESIPGIPD DLRCKRSDGK QWRCTAMSMA DKTVCEKHYI QAKKRAANSA FRANQKKAKR RSSLGETDTY 101: SEGKMDDFEL PVTSIDHYNN GLASASKSNG RLEKRHNKSL MRYSPETPMM RSFSPRVAVD LNDDLGRDVV MFEEGYRSYR TPPSVAVMDP TRNRSHQSTS 201: PMEYSAASTD VSAESLGEIC HQCQRKDRER IISCLKCNQR AFCHNCLSAR YSEISLEEVE KVCPACRGLC DCKSCLRSDN TIKVRIREIP VLDKLQYLYR 301: LLSAVLPVIK QIHLEQCMEV ELEKRLREVE IDLVRARLKA DEQMCCNVCR IPVVDYYRHC PNCSYDLCLR CCQDLREESS VTISGTNQNV QDRKGAPKLK 401: LNFSYKFPEW EANGDGSIPC PPKEYGGCGS HSLNLARIFK MNWVAKLVKN AEEIVSGCKL SDLLNPDMCD SRFCKFAERE ESGDNYVYSP SLETIKTDGV 501: AKFEQQWAEG RLVTVKMVLD DSSCSRWDPE TIWRDIDELS DEKLREHDPF LKAINCLDGL EVDVRLGEFT RAYKDGKNQE TGLPLLWKLK DWPSPSASEE 601: FIFYQRPEFI RSFPFLEYIH PRLGLLNVAA KLPHYSLQND SGPKIYVSCG TYQEISAGDS LTGIHYNMRD MVYLLVHTSE ETTFERVRKT KPVPEEPDQK 701: MSENESLLSP EQKLRDGELH DLSLGEASME KNEPELALTV NPENLTENGD NMESSCTSSC AGGAQWDVFR RQDVPKLSGY LQRTFQKPDN IQTDFVSRPL 801: YEGLFLNEHH KRQLRDEFGV EPWTFEQHRG EAIFIPAGCP FQITNLQSNI QVALDFLCPE SVGESARLAE EIRCLPNDHE AKLQILEIGK ISLYAASSAI 901: KEVQKLVLDP KFGAELGFED SNLTKAVSHN LDEATKRPQQ NSCT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)