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AT5G67330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16270029 (2005): plant-type vacuole plant-type vacuole membrane
  • PMID:15060130 (2004): plant-type vacuole
  • PMID:24030099 (2013): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : natural resistance associated macrophage protein 4
Curator
Summary (TAIR10)
Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.
Computational
Description (TAIR10)
natural resistance associated macrophage protein 4 (NRAMP4); FUNCTIONS IN: manganese ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: in 11 processes; LOCATED IN: vacuolar membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: natural resistance-associated macrophage protein 3 (TAIR:AT2G23150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22110eggNOG:COG1914eggNOG:KOG1291EMBL:AB007645
EMBL:AF202540EMBL:AK226381EMBL:AY136467EMBL:BT003406
EMBL:CP002688EnsemblPlants:AT5G67330EnsemblPlants:AT5G67330.1entrez:836868
GeneID:836868Genevisible:Q9FN18GO:GO:0005215GO:GO:0005773
GO:GO:0005774GO:GO:0006828GO:GO:0009624GO:GO:0010039
GO:GO:0016021GO:GO:0042742GO:GO:0055072GO:GO:2000379
Gramene:AT5G67330.1HAMAP:MF_00221hmmpanther:PTHR11706hmmpanther:PTHR11706:SF8
HOGENOM:HOG000152203InParanoid:Q9FN18IntAct:Q9FN18InterPro:IPR001046
KEGG:ath:AT5G67330OMA:ISWIVAAPANTHER:PTHR11706PaxDb:Q9FN18
Pfam:PF01566Pfam:Q9FN18PhylomeDB:Q9FN18PRIDE:Q9FN18
PRINTS:PR00447PRO:PR:Q9FN18ProteinModelPortal:Q9FN18Proteomes:UP000006548
Reactome:R-ATH-425410Reactome:R-ATH-917937RefSeq:NP_201534.1SMR:Q9FN18
STRING:3702.AT5G67330.1TAIR:AT5G67330tair10-symbols:ATNRAMP4tair10-symbols:NRAMP4
TIGRfam:TIGR01197TIGRFAMs:TIGR01197TMHMM:TMhelixUniGene:At.19993
UniProt:Q9FN18
Coordinates (TAIR10) chr5:+:26861822..26863580
Molecular Weight (calculated) 56388.40 Da
IEP (calculated) 4.72
GRAVY (calculated) 0.55
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MSETDRERPL LASEERAYEE TEKVLIVGID EEEDADYDDD PGNSPKFSWK KLWLFTGPGF LMSIAFLDPG NLESDLQAGA IAGYSLIWLL MWATAIGLLI
101: QLLSARLGVA TGRHLAELCR EEYPTWARMV LWIMAEIALI GADIQEVIGS AIAIKILSNG LVPLWAGVVI TALDCFIFLF LENYGIRKLE AVFAILIATM
201: ALAFAWMFGQ TKPSGTELLV GALVPKLSSR TIKQAVGIVG CIIMPHNVFL HSALVQSREV DPKKRFRVKE ALKYYSIEST GALAVSFIIN VFVTTVFAKS
301: FYGTEIADTI GLANAGQYLQ DKYGGGFFPI LYIWAIGVLA AGQSSTITGT YAGQFIMGGF LNLKMKKWVR ALITRSCAII PTMIVALVFD SSDSMLDELN
401: EWLNVLQSVQ IPFAVIPLLC LVSNEQIMGS FKIQPLVQTI SWIVAALVIA INGYLMVDFF SGAATNLILL VPVIIFAIAY VVFVLYLISR GLTYTPWQLV
501: ASSHKEPQRD DE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)