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AT5G62290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nucleotide-sensitive chloride conductance regulator (ICln) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleotide-sensitive chloride conductance regulator (ICln) family protein; FUNCTIONS IN: ion channel activity; INVOLVED IN: cell volume homeostasis, chloride transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sensitive chloride conductance regulator (InterPro:IPR003521); Has 295 Blast hits to 295 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 42; Plants - 66; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
BioGrid:21594eggNOG:ENOG4111R94eggNOG:KOG3238EMBL:AB019235
EMBL:AK119007EMBL:AY088500EMBL:BT005429EMBL:CP002688
EnsemblPlants:AT5G62290EnsemblPlants:AT5G62290.1entrez:836350GeneID:836350
Genevisible:Q9LVA7GO:GO:0000387GO:GO:0005634GO:GO:0005829
GO:GO:0005886GO:GO:0006821GO:GO:0006884GO:GO:0034709
GO:GO:0034715hmmpanther:PTHR21399HOGENOM:HOG000006325InParanoid:Q9LVA7
IntAct:Q9LVA7InterPro:IPR003521KEGG:ath:AT5G62290KO:K05019
OMA:LSHITEMPaxDb:Q9LVA7Pfam:PF03517Pfam:Q9LVA7
PhylomeDB:Q9LVA7PRIDE:Q9LVA7PRINTS:PR01348PRO:PR:Q9LVA7
ProteinModelPortal:Q9LVA7Proteomes:UP000006548RefSeq:NP_001119478.1RefSeq:NP_201035.1
SMR:Q9LVA7STRING:3702.AT5G62290.1TAIR:AT5G62290TCDB:1.A.47.4.1
UniGene:At.29057UniProt:Q9LVA7
Coordinates (TAIR10) chr5:+:25019568..25020972
Molecular Weight (calculated) 25604.20 Da
IEP (calculated) 3.79
GRAVY (calculated) -0.60
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAGLRDFTL RTEDGSGKPV LDESNGEELM HVQTSVAVAL GNRPIESPGT LYITSRKLIW LSDVDMAKGY AVDFLSISLH AVSRDPEAYS SPCIYTQIEV
101: EEDEDDESDS ESTEVLDLSK IREMRLVPSD STQLETLFDV FCECAELNPE PVQEEEEESG HNWVFSADQM DVRGGDDDAE WQISQSPTSV IGHSNGDEGL
201: NQPMLELQIN DQRFEDAEEM VHESETKDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)