AT5G61190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24615480..24619886 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111102.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.38 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 995 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTAEADYVK AKTSVWWDIE NCEVPRGWDA HVIALNVSSS LLKMNYCGPV SISAYGDTNL IPLHHQQALS STGVALNHIP AGVKDASDKK ILVDMLLWAI 101: DNPAPANLLL ISGDRDFSNA LHQLRMRRYN ILLAQPPRAS VPLVAAARDV WLWTVLASGG PPLTSVESSL LFNNGGFRVS NKGVSKLPVS EQAQPSQPTG 201: STSNAGDTKD HKTREKHVPR GSLQENRKNM LQHSSGATGE SATTCRICNV VCDSFEKFTA HLSDIRHISQ AAIVESRRAQ ASVSAKPIHQ AVLVEPLLCK 301: VCQISFTNND TYKNHTYGKK HRNNLELQSG KSKNILVGPA EPSKEVLEKH NMNKKVMIES RAQANAEFVC LMCNVVCQSQ IVFNSHLRGK KHANMLSQSE 401: ALIVSTKLQE KGVGEKEQPS ETVAELQLQS QKAQEKQVLV DSKKLPEKGD EVKGQPKEMT ALRNASAKYI CRMCNVGCHS PIVFETHLRG QKHAANLNQS 501: KDQALIDSKK LQEKGFGEKE QPRETIVEPQ LQSQNAQENS KCFEKHVVMV NQSEVLINAS KLEEKDAQEK AQPIESIAEP QSQSQNTQEH TKFFEKQNEE 601: LRKICGTLES SVKEPLPSTK DWVETLNKQI PNGEFFFGDL RSDFEVPREA SECFDGIVKP VNLSKGETKH SWEAAFVASN GSQSSVSTNP LKEPEGLQPV 701: WCQVCQISCN SKVAFASHTY GKKHRQNLES QSAKNETMST GPGKLSKDYG EKTKKVSCKN QTTFDSQLKS QNHYTMAKEL VEKAFVSAFE HVSALEQFSI 801: VDSRTIREDT DQEKEATKEQ TLVKMDGNGF RGAPEDKVEL NQEKHREALE QFSIDSRIIR EETDQEKEAT EEQTLVKMDD LGFRGAPEDK VELKERHTVS 901: ENLVHRVFTE QNRESRIPNE PRGCLDVIPE RVKLPPNVNV AKNLEDEQKH KPEPKAQEAE NKSGGRKDLP GEAAKREEIK GQADNFWTRL WGKKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)