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AT5G60250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITUZeggNOG:ENOG410XRXPEMBL:AB026632EMBL:CP002688
EnsemblPlants:AT5G60250EnsemblPlants:AT5G60250.1entrez:836147Gene3D:3.30.40.10
Gene3D:3.30.420.10GeneID:836147GO:GO:0003676GO:GO:0004842
GO:GO:0008270Gramene:AT5G60250.1hmmpanther:PTHR11685hmmpanther:PTHR11685:SF107
HOGENOM:HOG000070510InterPro:IPR001841InterPro:IPR002867InterPro:IPR012337
InterPro:IPR013083InterPro:IPR017907InterPro:IPR018957InterPro:IPR031127
KEGG:ath:AT5G60250OMA:VLIVENNPANTHER:PTHR11685Pfam:PF00097
Pfam:PF01485Pfam:PF13456Pfscan:PS50089PhylomeDB:Q9LSS2
PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_200833.1
scanprosite:PS00518SMART:SM00647SMR:Q9LSS2STRING:3702.AT5G60250.1
SUPFAM:SSF53098SUPFAM:SSF57850TAIR:AT5G60250UniGene:At.50542
UniProt:Q9LSS2
Coordinates (TAIR10) chr5:+:24252226..24254710
Molecular Weight (calculated) 73471.10 Da
IEP (calculated) 6.82
GRAVY (calculated) -0.53
Length 655 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFDSEYAFR LQMEEALAAS LSSQSRTPQR PPSPPIVATC GVLIVENNPN DSKTAKTSSG YGFDFKRAVG GGNSKAKGKT HESVTGVRTD ERNPNIGLGN
101: SRSTSTGHGN TKPLPQETVR PAQLVGEGSS RVNTAAGKIN GNLLYRLYFK GLVSDENGKG KMTDVVSGFG VAICDQRDNL LFEMKGPLID NGMSRQGAEL
201: KALIRGLTEA LKLGIKHIVF FCDSYPIFQY VTGKWMAKQK KISLLLDDLQ SIMQHFSSYQ HVLVARNDVK FAYKLARESI LSMVTPHEDP RQAKAVLKEE
301: CAICFNDIVA EGMFSVDKCR HRFCFQCVKQ HVEVKLLHGM APKCPHDGCK SELVIDACGK LLTPKLSKLW QQRLQENAIP VTERVYCPYP RCSALMSKTK
401: ISESAKSLLS LYPKSGVRRC VECRGLFCVD CKVPWHGNLS CTEYKKLHPE PPADDVKLKS LANNKMWRQC GKCQHMIELS QGCNHITCRC GHEFCYNCGG
501: GWNKIMGTCL NRCPTWNEEY ITRQDPARAN VAANNYFDDE DDDDVDGDYD YDDFFHPHFG HAMNDRNPEE PFDPFFDLPD GVLFTPQMLS SKSRQQLYLP
601: DSDDSDDNAT TQNAPAADEN CPYFGKYGKY TIMYDSDGYE LEDFTNPFHP DYPHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)