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AT5G59430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : telomeric repeat binding protein 1
Curator
Summary (TAIR10)
Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.
Computational
Description (TAIR10)
telomeric repeat binding protein 1 (TRP1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin supergroup (InterPro:IPR019955), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRF-like 1 (TAIR:AT3G46590.2); Has 326 Blast hits to 311 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 290; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUQMeggNOG:ENOG41106NAEMBL:AB025604EMBL:AK316779EMBL:AK318830EMBL:AY128382EMBL:AY519544
EMBL:BT000117EMBL:CP002688EMBL:Y17722EnsemblPlants:AT5G59430EnsemblPlants:AT5G59430.1EnsemblPlants:AT5G59430.2entrez:836062
EvolutionaryTrace:Q8L7L8Gene3D:1.10.10.60GeneID:836062Genevisible:Q8L7L8GO:GO:0000783GO:GO:0003691GO:GO:0005737
GO:GO:0005886GO:GO:0006351GO:GO:0006355GO:GO:0009651GO:GO:0009723GO:GO:0009733GO:GO:0009739
GO:GO:0009751GO:GO:0009753GO:GO:0009873GO:GO:0016020GO:GO:0031965GO:GO:0046686hmmpanther:PTHR21717
hmmpanther:PTHR21717:SF9InParanoid:Q8L7L8IntAct:Q8L7L8InterPro:IPR000626InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
InterPro:IPR029071iPTMnet:Q8L7L8KEGG:ath:AT5G59430MINT:MINT-1212501ncoils:CoilOMA:SHKCVEEPaxDb:Q8L7L8
PDB:2AJEPDBsum:2AJEPfam:Q8L7L8Pfscan:PS50053Pfscan:PS51294PhylomeDB:Q8L7L8PIR:T51230
PRIDE:Q8L7L8PRO:PR:Q8L7L8PROSITE:PS50053PROSITE:PS51294ProteinModelPortal:Q8L7L8Proteomes:UP000006548RefSeq:NP_001078770.1
RefSeq:NP_001078771.1RefSeq:NP_200751.1RefSeq:NP_851221.1SMART:SM00717SMR:Q8L7L8STRING:3702.AT5G59430.1SUPFAM:SSF46689
SUPFAM:SSF54236TAIR:AT5G59430tair10-symbols:ATTRP1tair10-symbols:TRP1UniGene:At.42990UniProt:Q8L7L8
Coordinates (TAIR10) chr5:+:23968254..23970695
Molecular Weight (calculated) 65039.70 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.68
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSHKCVEEF GYASYLVPSN ARAPRSARKR RSIEKRISKE DDNMCAIDLL ATVAGHLSFE SGSSLMSIDK LIEDHRVKEE FPEEEKPLMP VALSPYRGSL
101: SPCGFSSVIN GKVENEVDGF SYSGGSDACQ VGNFSQDVKP DIDGDAVVLD ARPNVVVSLG SSSRTEVPSI GNCVSHGVRD DVNLFSRDDD ENFSKYIHPR
201: VTKHSPRTVP RIGDRRIRKI LASRHWKGGS RHSDTKPWRN YYLHQQRSYP IKKRKNFDHI SDSVTDDYRM RTKMHRGSRK GQGASFVASD SHVKLRIKSF
301: RVPELFIEIP ETATVGSLKR MVMEAVSTLL SDGHRVGLMV QGKKVRDDNK TLHQTGISQD NSHLDSLDFS LEPSSEMPQL LTSHPLGHAC EELLPVCQAT
401: KIDNVLESDH HDSALFPSDS LGNNNVTEDS KAMISVALNE LSSQSQPPSR KSRRSEQQQQ QAAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLCAFE
501: DADHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLNR VLNAHGYWTQ QQMQQLQQNV NKLEQETQSQ TTEGLLLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)