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AT3G18980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.815
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : EIN2 targeting protein1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EIN2 targeting protein1 (ETP1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: EIN2 targeting protein2 (TAIR:AT3G18910.1); Has 1009 Blast hits to 963 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1009; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6764EMBL:AP000735EMBL:AY045839EMBL:AY087337
EMBL:AY091375EMBL:CP002686EnsemblPlants:AT3G18980EnsemblPlants:AT3G18980.1
EnsemblPlants:AT3G18980.2entrez:821431GeneID:821431Genevisible:Q9LJ68
Gramene:AT3G18980.1Gramene:AT3G18980.2hmmpanther:PTHR32133hmmpanther:PTHR32133:SF127
HOGENOM:HOG000112505InParanoid:Q9LJ68IntAct:Q9LJ68InterPro:IPR001810
InterPro:IPR006527InterPro:IPR011043InterPro:IPR017451iPTMnet:Q9LJ68
KEGG:ath:AT3G18980OMA:TSEYRICPaxDb:Q9LJ68Pfam:PF00646
Pfam:PF07734Pfam:Q9LJ68Pfscan:PS50181PhylomeDB:Q9LJ68
PRIDE:Q9LJ68PRO:PR:Q9LJ68PROSITE:PS50181ProteinModelPortal:Q9LJ68
Proteomes:UP000006548RefSeq:NP_001078185.1RefSeq:NP_566622.1SMART:SM00256
SMR:Q9LJ68STRING:3702.AT3G18980.1SUPFAM:0047741SUPFAM:SSF50965
SUPFAM:SSF81383TAIR:AT3G18980tair10-symbols:ETP1TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.8156UniProt:Q9LJ68
Coordinates (TAIR10) chr3:+:6546514..6547761
Molecular Weight (calculated) 47888.90 Da
IEP (calculated) 5.93
GRAVY (calculated) -0.50
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIPDLCNDL VDEILCRVPA RNLKRLRSTS KRWNRLFKDD RRFAREHMHK APKEYLPLML TSEYRICPVS INLQGDVPSV VLKRELSLPD PDYSHQFDIG
101: RVFHCDGLLV CNHVGKNPRY GSKIVVWNPL TGQTRWIEAG YRWKEYEVRF VLGYCYQQDE NNSCSKKIYK ILCFYPNGQD TEIYELNYSD RWTRTIPDGD
201: LTPGWTLIYS EQTVSMNGNL YLFASEKSKP HLGVSLLRFD FSTEKSSLCV TLPYQRPRYE ILSISAVRGG ENLSLLLQLD FESKTEIWVT NKIDDTTTKG
301: AAVSWTKVLA FDLSPDLQLF SEEVNFLLDE DKKVAVCCER WLEPQEHHRY QCRREYKITD KIYILGEDNK VDEVGSGEGE ATDSLEGISQ VILNYAPSLV
401: QIEQAGGGKT KRGDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)