suba logo
AT5G52560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-sugar pyrophosphorylase
Curator
Summary (TAIR10)
Encodes a protein with UTP:sugar 1-phosphate uridylyltransferase activity, which has been shown to use a wide range of substrates including glucose-1-P, galactose-1-P, xylose-1-P, arabinose-1-P and glucuronate-1-P. The enzyme was shown to require Mg2+ or Mn2+ for activity. Mutations in USP can lead to a complete loss of male fertility.
Computational
Description (TAIR10)
UDP-sugar pyrophosphorylase (USP); FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: N-acetylglucosamine-1-phosphate uridylyltransferase 1 (TAIR:AT1G31070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G52560-MONOMERBioCyc:MetaCyc:AT5G52560-MONOMERBRENDA:2.7.7.64EC:2.7.7.64
eggNOG:COG4284eggNOG:KOG2388EMBL:AB025606EMBL:AF360236
EMBL:AY040035EMBL:CP002688EMBL:DQ324529EnsemblPlants:AT5G52560
EnsemblPlants:AT5G52560.1entrez:835333Gene3D:3.90.550.10GeneID:835333
Genevisible:Q9C5I1GO:GO:0003983GO:GO:0005829GO:GO:0006011
GO:GO:0009226GO:GO:0009555GO:GO:0010491GO:GO:0017103
GO:GO:0033356GO:GO:0046398GO:GO:0046686GO:GO:0047338
GO:GO:0047350GO:GO:0051748GO:GO:0052573GO:GO:0090406
Gramene:AT5G52560.1gramene_pathway:2.7.7.-gramene_pathway:2.7.7.10gramene_pathway:2.7.7.37
gramene_pathway:2.7.7.44gramene_pathway:2.7.7.9gramene_pathway:GALACTMETAB-PWYgramene_pathway:PWY-3821
gramene_pathway:PWY-4gramene_pathway:PWY-4841gramene_pathway:PWY-621gramene_pathway:PWY-82
gramene_pathway:PWYQT-4437gramene_pathway:PWYQT-4466gramene_pathway:PWYQT-4467gramene_pathway:SUCSYN-PWY
gramene_plant_reactome:1119431gramene_plant_reactome:6876217hmmpanther:PTHR11952hmmpanther:PTHR11952:SF9
HOGENOM:HOG000256638InParanoid:Q9C5I1InterPro:IPR002618InterPro:IPR029044
KEGG:ath:AT5G52560KO:K12447OMA:IRIRGFRPANTHER:PTHR11952
PaxDb:Q9C5I1Pfam:PF01704Pfam:Q9C5I1PhylomeDB:Q9C5I1
PRIDE:Q9C5I1PRO:PR:Q9C5I1ProteinModelPortal:Q9C5I1Proteomes:UP000006548
RefSeq:NP_568775.1SMR:Q9C5I1STRING:3702.AT5G52560.1SUPFAM:SSF53448
TAIR:AT5G52560tair10-symbols:ATUSPtair10-symbols:USPUniGene:At.19016
UniGene:At.49163UniProt:Q9C5I1
Coordinates (TAIR10) chr5:+:21331230..21334573
Molecular Weight (calculated) 67856.00 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.31
Length 614 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTVDSNFF SSVPALHSNL GLLSPDQIEL AKILLENGQS HLFQQWPELG VDDKEKLAFF DQIARLNSSY PGGLAAYIKT AKELLADSKV GKNPYDGFSP
101: SVPSGENLTF GTDNFIEMEK RGVVEARNAA FVLVAGGLGE RLGYNGIKVA LPRETTTGTC FLQHYIESIL ALQEASNKID SDGSERDIPF IIMTSDDTHS
201: RTLDLLELNS YFGMKPTQVH LLKQEKVACL DDNDARLALD PHNKYSIQTK PHGHGDVHSL LYSSGLLHKW LEAGLKWVLF FQDTNGLLFN AIPASLGVSA
301: TKQYHVNSLA VPRKAKEAIG GISKLTHVDG RSMVINVEYN QLDPLLRASG FPDGDVNCET GFSPFPGNIN QLILELGPYK DELQKTGGAI KEFVNPKYKD
401: STKTAFKSST RLECMMQDYP KTLPPTARVG FTVMDIWLAY APVKNNPEDA AKVPKGNPYH SATSGEMAIY RANSLILQKA GVKVEEPVKQ VLNGQEVEVW
501: SRITWKPKWG MIFSDIKKKV SGNCEVSQRS TMAIKGRNVF IKDLSLDGAL IVDSIDDAEV KLGGLIKNNG WTMESVDYKD TSVPEEIRIR GFRFNKVEQL
601: EKKLTQPGKF SVED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)