AT5G52320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.512 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 96, subfamily A, polypeptide 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP96A | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 96, subfamily A, polypeptide 4 (CYP96A4); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 96, subfamily A, polypeptide 3 (TAIR:AT1G65340.1); Has 28681 Blast hits to 28604 proteins in 1474 species: Archae - 45; Bacteria - 2612; Metazoa - 10653; Fungi - 6357; Plants - 7925; Viruses - 3; Other Eukaryotes - 1086 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21245111..21246619 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57288.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.10 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMIIGLLEI FIAFIFFFVY QCFSLHKKTP KHMVMNWPVL GMLPGVLFQI PRIYDFVTEA LEAENMTGCF IGPWLSGTDI LLTVDPVNIQ YILSSNFVNY 101: PKGKKFNKIF EFLGDGIFNV DSGLWEDMRN SSHAIFSHQD FQSFSVSTSV SKLSQGLVPI LDNAVEKHIL VDLQDLFQRF LFDTSSTLMA GYDPKSLSVE 201: MPKVEFADAM DGVADAMFYR HLKPAFLWSI QSWIGVGIEK KMRRGLDVFD QMLGKIISAK REEIKNHGIH DSKGEAMDVL TYYMTIDTTK YKHLKPSNDK 301: FIRDTILGLV IAARDTTSSA LTWFFWLLSK NPEAMTKIRQ EINKKMPKFD PADLDKLVYL DGAVCETLRL YPSVPFNHKS PAKPDVLPSG HKVDKNWRVV 401: IPIYSLGRMK SVWGDDAEDF RPERWISDSG MLRQESSYKF LAFNAGPRTC LGKRLTFLQM KTVAVEIIRN YDIKVVEGHK PKPVPSVLLR MQHGLKVSVT 501: KI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)