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AT5G45960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
SwissProt : extracellular 16381842
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G06990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G45960-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410ITGSEMBL:AB016870EMBL:AY084721EMBL:CP002688
EnsemblPlants:AT5G45960EnsemblPlants:AT5G45960.1entrez:834636Gene3D:3.40.50.1110GeneID:834636Genevisible:Q9FJ40GO:GO:0005576
GO:GO:0016042GO:GO:0016788Gramene:AT5G45960.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF261HOGENOM:HOG000237650InParanoid:Q9FJ40
InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT5G45960OMA:NVIDIPTPaxDb:Q9FJ40Pfam:PF00657Pfam:Q9FJ40
PhylomeDB:Q9FJ40PRIDE:Q9FJ40PRO:PR:Q9FJ40ProteinModelPortal:Q9FJ40Proteomes:UP000006548RefSeq:NP_199408.1SUPFAM:SSF52266
TAIR:AT5G45960TMHMM:TMhelixUniGene:At.29984UniProt:Q9FJ40
Coordinates (TAIR10) chr5:-:18637174..18640319
Molecular Weight (calculated) 42484.10 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.04
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSHHRHFSS YVSFILFLFL FFISFSSSTS KLEPAKSEPK RKHSVSAILV FGDSTVDPGN NNYIDTVFKC NFPPYGLDFR NKTPTGRFCN GRLVTDFIAS
101: YIGVKENVPP YLDPNLGINE LISGVSFASA GSGYDPLTPT ITNVIDIPTQ LEYFREYKRK LEGKMGKQEM EKHIEEAMFC VSAGTNDFVI NYFTIPIRRK
201: TFTIEAYQQF VISNLKQFIQ GLWKEGARKI TVAGLPPIGC LPIVITLFSG EALTNRRCID RFSTVATNYN FLLQKQLALM QVGLAHLGSK IFYLDVYNPV
301: YEVIRDPRKF GFEEVFSGCC GSGYLEASFL CNPKSYVCPN TSAYVFFDSI HPSEKTYFSL FRSLRPIYDS ILGSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)