AT5G45610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protein dimerizations | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a homologue of the ATR-interacting protein ATRIP. Mutant (named sensitive to UV2 or suv2) is UVB-hypersensitive and defective in DNA damage response. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SENSITIVE TO UV 2 (SUV2); Has 65 Blast hits to 63 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 13; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18496397..18499673 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72810.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||
| Length | 646 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGNDEEFND EFLLAIDSIE TTLKKADMYR PLPPPYLPTF LPAPPPSTKI SSSLSHPMQL QSSAGQQRKQ IQVPDPFLSY SPPRELSQRV VSGFNDALMD 101: YSNSTVVTAA KPISPTTSNR RCDSEKDLEI DRLKKELERV SKQLLDVEQE CSQLKKGKSK ETESRNLCAD DNRGQCSTVH ASKRIDLEPD VATSSVNHRE 201: NDSRMALDDK RSFKTTGVQA DVANHSDLSK KLLDIWRTSN YQDPRKNLIS ELLLACSTDL QILFSFMKIS TPPQELNKQE AKTSSDRQSS KALESEKVYQ 301: LYSAVTKISY GFVNLKTLVE PLLDLCKAET AVLVHRSLRV LHVLLEHICG DEKRFEASWD ANWHSLFKLM NQIASKRTEQ DVKQEALSIM NIIVMSTDAY 401: TARESFVSKE VFESISLLLR KEGGLHVRKE AIHLFYLLLN CPKLYDTFDS LHEEKNSSDT ENDSEGNFFA LEAFGKIFEG LADCLTSPRK TSEDLELCRN 501: VIMILALAAS SGNSGYELLS SHKLPQDSSF LMLILHLLVA EIDSESTEFH PKAEIFKART LLMREILILL NRLVSGLSSS ATILKELTTS RDMASLTVDA 601: ATRLSRKRNL LGKPESSVER MRNTEIMDLA RIFKKRVFAF LGDNTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)