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AT5G42720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G16230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42720-MONOMERCAZy:GH17eggNOG:ENOG410IG6PeggNOG:ENOG410YAGIEMBL:AY074288EMBL:AY150489EMBL:CP002688
EnsemblPlants:AT5G42720EnsemblPlants:AT5G42720.1entrez:834281Gene3D:3.20.20.80GeneID:834281GO:GO:0004553GO:GO:0005975
GO:GO:0031225Gramene:AT5G42720.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF16HOGENOM:HOG000238220InterPro:IPR000490InterPro:IPR013781
InterPro:IPR017853KEGG:ath:AT5G42720OMA:ASLAHICPfam:PF00332Pfscan:PS51257PhylomeDB:Q8VY12Proteomes:UP000006548
RefSeq:NP_199086.2SMR:Q8VY12SUPFAM:SSF51445TAIR:AT5G42720UniGene:At.46813UniProt:Q8VY12
Coordinates (TAIR10) chr5:+:17130535..17132763
Molecular Weight (calculated) 47171.60 Da
IEP (calculated) 7.13
GRAVY (calculated) -0.02
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MRASVYSLIL LFFSCLLHLS KSQPFLGVNY GLTADNLPPP SASAKLLQST TFQKVRLYGS DPAVIKALAN TGIEIVIGAS NGDVPGLASD PSFARSWVET
101: NVVPYYPASK IVLIAVGNEI TSFGDNSLMS QLLPAMKNVQ TALEAASLGG GKIKVSTVHI MSVLAGSDPP STAVFKPEHA DILKGLLEFN SETGSPFAVN
201: PYPFFAYQDD RRPETLAYCL FQANPGRVDP NSNLKYMNMF DAQVDAVYSA LNSMGFKDVE IMVAETGWPY KGDPEEAGAT VENARAYNKN LIAHLKSGSG
301: TPLMPGRVID TYLFALYDEN LKPGKGSERA FGLFRPDLTM TYDIGLTKTT NYNQTSMAPL SPTRPRLPPA AAPTRQTLPS PPQMILPSPV TPSDKNSGQT
401: DVHNSTPRSA SLAHICRSLS ISASMFFVSV LYALIILL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)