AT5G40840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rad21/Rec8-like family protein | ||||||||||||
| Curator Summary (TAIR10) |
Cohesion family protein SYN2 (SYN2). | ||||||||||||
| Computational Description (TAIR10) |
SYN2; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: sister chromatid cohesion 1 protein 4 (TAIR:AT5G16270.1); Has 1217 Blast hits to 955 proteins in 245 species: Archae - 0; Bacteria - 80; Metazoa - 480; Fungi - 224; Plants - 240; Viruses - 3; Other Eukaryotes - 190 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16359611..16363722 | ||||||||||||
| Molecular Weight (calculated) | 91336.00 Da | ||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||
| Length | 809 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFYSHCLVSR KGPLGAIWVA AYFFKKLKKS QVKATHIPSS VDQILQKELD ALTYRVLAYL LLGVVRIYSK KVDFLFDDCN KALIGVKEFV AKERNREKTG 101: VSLPASIECF SIALPERFEL DAFDLGVLED FHGGNVKPHE DITLKDGSQE TERMDMYSME RFDMEEDLLF TFHETFSTNH NENKHESFAH DMELDAENVR 201: DTTEEASVRV VEAEPLDSNE PSRDHQNASR HREDPESDDI LLEPQMSEDI RIAQEEDTVR ETICTIVQRL VDSHESSGDN LHRDGHTENL ESEKTSKKTS 301: CEEMQHDRSL PSECGIPEAI HGIEDQPSGA TRINGEKEIP EMSTLEKPEP VSVTGSRDLQ EGVEKCRDHN EAEMADFELF HGSHKEQSET SEVNLHGSEK 401: GFLSDMTVSK DPSSEFNATD TPVTVTPKTP SRLKISEGGT SPQFSIIPTP AAKESSRVSR KRKCLIDDEV IIPNKVMKEM IEDSSKLLAK RRNVPHTDCP 501: ERRTKRFANP FRSFLEPLIQ YGSSDLQSLF CQPIKLKNWA TTGTPKDTKI ARHKEKSSLD TVRSPGVILS SDQTENTQEI METPQAAALA GLKVTAGNSN 601: VVSVEMGASS TTSGTAHQTE NAAETPVKPS VIAPETPVRT SEQTVIAPET PVVSEQVEIA PETPVRESMS KRFFKDPGTC YKKSRPASPF TSFEEHPSVY 701: YVENRDLDTI LMNDEVNADE RQDLQQETWS SRTRNVAKFL EKTFLEQRER EEEEKVSLLQ LCRGRTQKES ARLFYETLVL KTKGYVEVKQ NHPYSDVFLM 801: RVSRPQKAC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)