suba logo
AT5G40270.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.599
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HD domain-containing metal-dependent phosphohydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HD domain-containing metal-dependent phosphohydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: HD domain-containing metal-dependent phosphohydrolase family protein (TAIR:AT5G40290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:834025eggNOG:COG1078eggNOG:KOG2681EMBL:AB010699EMBL:AF389282EMBL:AY102154EMBL:CP002688
EnsemblPlants:AT5G40270EnsemblPlants:AT5G40270.1entrez:834025Gene3D:1.10.3210.10GeneID:834025GO:GO:0016787Gramene:AT5G40270.1
hmmpanther:PTHR11373hmmpanther:PTHR11373:SF31HOGENOM:HOG000264286InterPro:IPR003607InterPro:IPR006674KEGG:ath:AT5G40270OMA:TQRDILC
Pfam:PF01966PhylomeDB:Q9FL05Proteomes:UP000006548RefSeq:NP_568580.1SMART:SM00471SMR:Q9FL05STRING:3702.AT5G40270.1
SUPFAM:SSF109604TAIR:AT5G40270UniGene:At.9204UniProt:Q9FL05
Coordinates (TAIR10) chr5:-:16093394..16097093
Molecular Weight (calculated) 54676.70 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.35
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAYCDENLS SLPVFSSGAP ANELRFSKHV YDNVHGNIYL DPLCLKFIDT EQFQRLRELK QLGVTNMVYP GAVHSRFEHS LGVYWLAGET AQRLKNFQGM
101: ELGIDNYDLQ TVRLAGLLHD IGHGPFSHMF EREFLPKVIS DCQWSHELMS VNMIDHMVDT HHIDIDAQML KRVKDMILAS TEFSQLKGNA EKRFLYDIVA
201: NGRNGIDVDK FDYLVRDSRA CGLGSNFQFQ RLTETMRVLD NEICFRAKEY LSVHKLFATR ADLYRTVYTH SKVKAIELMI VDAMVKANNH LEISSMINDP
301: SEYWKLDDTI LKTIEIAPDP ELAEAKELIL RVRRRQLYQF CNEYAVPKDK IDHFKAVTPQ DIICSQKHTS LTLKEEDIAV TNVKIDLARG RENPLECINF
401: YKDYDSAEKF VIPEDRVSHL LPTTYQDMIV RVYAKKPELV EAVSEAFENF QMRTYGIKAQ VHATPEKKKR RVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)