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AT5G39500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GNOM-like 1
Curator
Summary (TAIR10)
Encodes GNOM-LIKE1/ERMO1, a member of ARF-GEF family. Required for endoplasmic reticulum (ER) morphology.
Computational
Description (TAIR10)
GNOM-like 1 (GNL1); FUNCTIONS IN: ARF guanyl-nucleotide exchange factor activity; INVOLVED IN: ER body organization; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: sec7 domain-containing protein (TAIR:AT1G13980.2); Has 2885 Blast hits to 2457 proteins in 243 species: Archae - 0; Bacteria - 32; Metazoa - 1491; Fungi - 682; Plants - 262; Viruses - 0; Other Eukaryotes - 418 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5307eggNOG:KOG0928EMBL:AB009054EMBL:CP002688
EnsemblPlants:AT5G39500EnsemblPlants:AT5G39500.1entrez:833946Gene3D:1.10.1000.11
GeneID:833946Genevisible:Q9FLY5GO:GO:0000139GO:GO:0005086
GO:GO:0005794GO:GO:0005802GO:GO:0005829GO:GO:0006890
GO:GO:0006897GO:GO:0015031GO:GO:0032012GO:GO:0043547
GO:GO:0080119Gramene:AT5G39500.1hmmpanther:PTHR10663hmmpanther:PTHR10663:SF155
HOGENOM:HOG000239037InParanoid:Q9FLY5InterPro:IPR000904InterPro:IPR023394
InterPro:IPR032691iPTMnet:Q9FLY5KEGG:ath:AT5G39500KO:K18443
OMA:DICTIVNPaxDb:Q9FLY5Pfam:PF01369Pfam:PF12783
Pfam:Q9FLY5Pfscan:PS50190PhylomeDB:Q9FLY5PRIDE:Q9FLY5
PRO:PR:Q9FLY5PROSITE:PS50190ProteinModelPortal:Q9FLY5Proteomes:UP000006548
Reactome:R-ATH-199997Reactome:R-ATH-421837Reactome:R-ATH-6807878RefSeq:NP_198766.1
SMART:SM00222SMR:Q9FLY5STRING:3702.AT5G39500.1SUPFAM:SSF48425
TAIR:AT5G39500tair10-symbols:ERMO1tair10-symbols:GNL1UniGene:At.30340
UniProt:Q9FLY5
Coordinates (TAIR10) chr5:+:15815274..15819910
Molecular Weight (calculated) 161963.00 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.08
Length 1443 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGYQNHPSGS NSFHGEFKRC HSKPSKGAVA SMINSEIGAV LAVMRRNVRW GVRYIADDDQ LEHSLIHSLK ELRKQIFSWQ SNWQYVDPRL YIQPFLDVIL
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)