AT5G23800.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.530 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 10 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DOMAIN OF UNKNOWN FUNCTION 724 10 (DUF 10); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 8 (TAIR:AT5G23770.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:8022216..8024689 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63862.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||
| Length | 552 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRQVPSESL SLSEGCEVEI SYKNNGNESV WYKAILEAKP NSIFKEELSV RLLKDDFSTP LNELRHKVLI RPIPPTNVQA CIDIEIGTFV DADYKDAWWA 101: GFVVKVIDDD KFWVCFDSPP DIIQFDRNHL RPTLEWVDEK IYSWWIIGST RNSEFLKRLA EEPMFSPGTI VELCSKRDEG EVVWVPALVY KEFKENDEYR 201: YIVKDKPLIG RSYKSRPSKT VDLRSLRPIP PPIRVKEYRL DEYIEVYHDG IGWRQGRVVK SEGGVMGSLF QNWCTLLLEA TKKQLMFKQS DLRPLRVWED 301: GVWKTRESSL TQGSGDKTEV ETQRKTFPKK TLPRNQNGSG NDSTLENENS NRKRKREENL CSGSSVEETN ILFEKKLPVW KILESMEVFK TIPQSPHFRP 401: LAEIREDSRE MLAVGMMLTF SCLLEQVKAL QHDEARSSFI SLSNSFAELE KHGFNAQVAQ LRINKLLTLR GMQSRKMDEL KGAKKVTAEK ESVKVENERK 501: ILELQRLNEE MAKEIAQSMS CEGKILQQLD NMKLEFQATA SAPWPKWAFR ST |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)