suba logo
AT5G20680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 16
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 16 (TBL16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 14 (TAIR:AT5G64020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH0SeggNOG:ENOG4110MRAEMBL:AF296832EMBL:AK316699
EMBL:AY056231EMBL:CP002688EnsemblPlants:AT5G20680EnsemblPlants:AT5G20680.1
EnsemblPlants:AT5G20680.2EnsemblPlants:AT5G20680.3entrez:832191ExpressionAtlas:F4K5L5
GeneID:832191Genevisible:F4K5L5GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0016021GO:GO:0016413GO:GO:0071554
hmmpanther:PTHR32285hmmpanther:PTHR32285:SF5HOGENOM:HOG000238066InParanoid:F4K5L5
InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962InterPro:IPR029969
KEGG:ath:AT5G20680ncoils:CoilOMA:HSIVNWVPANTHER:PTHR32285
PANTHER:PTHR32285:SF5PaxDb:F4K5L5Pfam:F4K5L5Pfam:PF13839
Pfam:PF14416PRIDE:F4K5L5PRO:PR:F4K5L5ProteinModelPortal:F4K5L5
Proteomes:UP000006548RefSeq:NP_001078609.1RefSeq:NP_001154728.1RefSeq:NP_568398.1
TAIR:AT5G20680tair10-symbols:TBL16TMHMM:TMhelixUniGene:At.19736
UniProt:F4K5L5
Coordinates (TAIR10) chr5:+:6998946..7001596
Molecular Weight (calculated) 62319.80 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.61
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MNETFSATPR SMTIHRYRMK RGALRRRARD ISVMLVVLVC ATVVIWTWDR TPTSAFLPPE SHYLKLQSEE KVEKLPTALN TETKDSYSSA IPFVNKEESK
101: EDSSDNKDTE EEEEKQVEEV TVSNTNRGKI PTIEEKKGEH EVIASEPKYR KTPTREDFKL EKVKHEVAVG EGEATETTHI KETNSDPKSN ILATDEERTD
201: GTSTARITNQ ACNYAKGKWV VDNHRPLYSG SQCKQWLASM WACRLMQRTD FAFESLRWQP KDCSMEEFEG SKFLRRMKNK TLAFVGDSLG RQQFQSMMCM
301: ISGGKERLDV LDVGPEFGFI TPEGGARPGG WAYRFPETNT TVLYHWSSTL CDIEPLNITD PATEHAMHLD RPPAFLRQYL QKIDVLVMNT GHHWNRGKLN
401: GNKWVMHVNG VPNTNRKLAA LGNAKNFTIH STVSWVNSQL PLHPGLKAFY RSLSPRHFVG GEWNTGGSCN NTTPMSIGKE VLQEESSDYS AGRAVKGTGV
501: KLLDITALSH IRDEGHISRF SISASRGVQD CLHWCLPGVP DTWNEILFAM I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)