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AT5G20600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GJ6eggNOG:KOG3911EMBL:AK229097EMBL:AY079013
EMBL:BT004516EMBL:CP002688EnsemblPlants:AT5G20600EnsemblPlants:AT5G20600.1
entrez:832182GeneID:832182GO:GO:0005829GO:GO:0006364
GO:GO:0030688Gramene:AT5G20600.1hmmpanther:PTHR13026hmmpanther:PTHR13026:SF0
HOGENOM:HOG000241093InterPro:IPR010301KEGG:ath:AT5G20600KO:K14849
OMA:ENMITINPANTHER:PTHR13026Pfam:PF05997PhylomeDB:Q8RY12
PRO:PR:Q8RY12Proteomes:UP000006548RefSeq:NP_197560.2STRING:3702.AT5G20600.1
TAIR:AT5G20600UniGene:At.49044UniGene:At.70190UniProt:Q8RY12
Coordinates (TAIR10) chr5:-:6966345..6967943
Molecular Weight (calculated) 59992.80 Da
IEP (calculated) 10.19
GRAVY (calculated) -0.42
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKRNRVPPA EQALPIEEDC KSLIKKLASC KQSIRDRSLR TVLRTWLPEQ TEISDEDMKK LWQGIFYCVW HADKSLYQSE LIDRLSSALQ SLPLPLSIHY
101: FTVFLFTMRR EWSRIDRLRL DKFYLLIRRF LHGFFSLIDS NSWDLEFTRR LMGILFDGTL LADDKFQGNG VNYHITSAFV EELRPFLPLR KEVLELLFAP
201: FVKIMGVVND KILVGKIKSN LFDELLKMGK KLLIIKQSGD DAVPEDDDVV VLGSIALSME FAKRFYELGS SPECHQGNRK LIFALHKEFL QLEKDMSSSS
301: IEVSIVEASR PGNDEVPESV PVSESNTNVV SKSKKIVANG SSSKKKGLKK CSKTKKDSVK KGAVMDSVVD LGNKDESFDE TMISDLRQEF EKIASEMSPS
401: KSEVASVCDV AEPVSVSKKT KKRKRENKGE EQVSTVNRDA AETSLAGPSS EKSSKRVRFA MKNNLVWKPH CPLPPQDLRC PPSATPRGSA LKQGIPAGPV
501: RELASRKTKK KVKPAARRGV KSIKNLKKKL SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)