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AT5G20250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Raffinose synthase family protein
Curator
Summary (TAIR10)
encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.
Computational
Description (TAIR10)
DARK INDUCIBLE 10 (DIN10); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to karrikin, aging, response to light stimulus, response to cold, response to sucrose stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1); Has 568 Blast hits to 539 proteins in 163 species: Archae - 27; Bacteria - 128; Metazoa - 0; Fungi - 82; Plants - 321; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20250-MONOMERBioCyc:ARA:GQT-1883-MONOMERBioCyc:ARA:GQT-1884-MONOMERBioCyc:ARA:GQT-1885-MONOMER
BioGrid:17423BRENDA:2.4.1.82CAZy:GH36EC:2.4.1.82
eggNOG:ENOG410IH7PeggNOG:ENOG410YBU9EMBL:AF296825EMBL:AK221808
EMBL:AK227214EMBL:AK316714EMBL:AK317307EMBL:AK318923
EMBL:AY090237EMBL:BT000632EMBL:CP002688EnsemblPlants:AT5G20250
EnsemblPlants:AT5G20250.1EnsemblPlants:AT5G20250.2EnsemblPlants:AT5G20250.3entrez:832147
ExpressionAtlas:Q8RX87Gene3D:3.20.20.70GeneID:832147Genevisible:Q8RX87
GO:GO:0005975GO:GO:0047274gramene_pathway:2.4.1.82gramene_pathway:PWY-5337
HOGENOM:HOG000237551InParanoid:Q8RX87IntAct:Q8RX87InterPro:IPR008811
InterPro:IPR013785InterPro:IPR017853iPTMnet:Q8RX87KEGG:ath:AT5G20250
KO:K06617PaxDb:Q8RX87Pfam:PF05691Pfam:Q8RX87
PhylomeDB:Q8RX87PRIDE:Q8RX87PRO:PR:Q8RX87ProteinModelPortal:Q8RX87
Proteomes:UP000006548RefSeq:NP_001031910.1RefSeq:NP_001190347.1RefSeq:NP_197525.1
RefSeq:NP_851044.2STRING:3702.AT5G20250.4SUPFAM:SSF51445TAIR:AT5G20250
tair10-symbols:DIN10UniGene:At.25459UniGene:At.74986UniProt:Q8RX87
Coordinates (TAIR10) chr5:+:6834207..6836635
Molecular Weight (calculated) 83121.00 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.27
Length 749 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIKPAVRIS DGNLIIKNRT ILTGVPDNVI TTSASEAGPV EGVFVGAVFN KEESKHIVPI GTLRNSRFMS CFRFKLWWMA QRMGEMGRDI PYETQFLLVE
101: SNDGSHLESD GANGVECNQK VYTVFLPLIE GSFRSCLQGN VNDEVELCLE SGDVDTKRSS FTHSLYIHAG TDPFQTITDA IRTVKLHLNS FRQRHEKKLP
201: GIVDYFGWCT WDAFYQEVTQ EGVEAGLKSL AAGGTPPKFV IIDDGWQSVE RDATVEAGDE KKESPIFRLT GIKENEKFKK KDDPNVGIKN IVKIAKEKHG
301: LKYVYVWHAI TGYWGGVRPG EEYGSVMKYP NMSKGVVEND PTWKTDVMTL QGLGLVSPKK VYKFYNELHS YLADAGVDGV KVDVQCVLET LGGGLGGRVE
401: LTRQFHQALD SSVAKNFPDN GCIACMSHNT DALYCSKQAA VIRASDDFYP RDPVSHTIHI ASVAYNSVFL GEFMQPDWDM FHSVHPAAEY HASARAISGG
501: PLYVSDSPGK HNFELLRKLV LPDGSILRAR LPGRPTRDCL FADPARDGVS LLKIWNMNKY TGVLGVYNCQ GAAWSSTERK NIFHQTKTDS LTGSIRGRDV
601: HSISEASTDP TTWNGDCAVY SQSRGELIVM PYNVSLPVSL KIREHEIFTV SPISHLVDGV SFAPIGLVNM YNSGGAIEGL RYEAEKMKVV MEVKGCGKFG
701: SYSSVKPKRC VVESNEIAFE YDSSSGLVTF ELDKMPIENK RFHLIQVEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)