suba logo
AT5G12260.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 0.851
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIYNeggNOG:ENOG4111ESDEMBL:AB007727EMBL:AY123994EMBL:BT010470EMBL:CP002688EnsemblPlants:AT5G12260
EnsemblPlants:AT5G12260.1entrez:831101GeneID:831101GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0016757
Gramene:AT5G12260.1hmmpanther:PTHR33604HOGENOM:HOG000237777InterPro:IPR029044KEGG:ath:AT5G12260OMA:IRNLLCHPhylomeDB:Q9FMN8
Proteomes:UP000006548RefSeq:NP_196787.1STRING:3702.AT5G12260.1SUPFAM:SSF53448TAIR:AT5G12260TMHMM:TMhelixUniGene:At.32158
UniProt:Q9FMN8
Coordinates (TAIR10) chr5:+:3966417..3968684
Molecular Weight (calculated) 71449.80 Da
IEP (calculated) 9.36
GRAVY (calculated) -0.22
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSQSRRRNP TLRSMAMVFA QPKKNLLPLI LFLFCISVII LLVLVSETTH SNAGRGTTFR RNYNDPAPFT FLIKVLTFNR LHSLSRCLRS LSAADYGVSG
101: DRGRIHLHVY IDHFNLARND TPVEDNLQIA REILGFVDRF EWRFGEKVVH YRTDNAGLQA QWLEAWWPIS DHEFAFVVED DLEVSPLYYG ILERLILKYY
201: YDTSNFNPSI YGASLQRPRF VPGKHGNKLH VDPKTNLILY QLVGTWGQLL FPKPWKEFRL WYDEHKSKGK KPFLDGMVSN GWYKRLGERI WTPWFIKFVH
301: SRGYFNIYTS FPNEGALSVS HRDAGVNYGR TAGPDSQLLN KSSLSSDSLK LQPLSNLKWY DFCFSEVVPG RVVRNLNELG TILPSVQREK TIILVSLYGA
401: DKMFIRNLLC HFEKLNIQNH IFIGPSSELF HDLSRRGHPV IDADMFLNKL IKSKTSYPNS VKEALGNSYV VKKCLELGYS TWAFSSNSLL VDKGRLLDRV
501: SSDYDIYIGE SSGILIVQSS SVTQKLWSNE FLHSIASPKQ SLDFIHLVKE LVEQKGKRIK TVETMNIAEN TNANSVNQSL GDGKPVVYWS PEVAPNMIRS
601: KLEELSLWLI DDDLSCKAVV CHSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)