suba logo
AT5G03350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:22363647 (2012): extracellular region apoplast
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Legume lectin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, cell wall, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT3G16530.1); Has 1816 Blast hits to 1796 proteins in 114 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 1792; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1003-MONOMEReggNOG:ENOG410JT9ReggNOG:ENOG4110823EMBL:AK229686
EMBL:AL162751EMBL:BT006141EMBL:BT015683EMBL:CP002688
EnsemblPlants:AT5G03350EnsemblPlants:AT5G03350.1entrez:831863Gene3D:2.60.120.200
GeneID:831863Genevisible:Q9LZF5GO:GO:0005618GO:GO:0005886
GO:GO:0009507GO:GO:0009627GO:GO:0016301GO:GO:0030246
GO:GO:0048046GO:GO:0071446Gramene:AT5G03350.1hmmpanther:PTHR32401
hmmpanther:PTHR32401:SF2HOGENOM:HOG000153030InParanoid:Q9LZF5InterPro:IPR001220
InterPro:IPR013320InterPro:IPR016363iPTMnet:Q9LZF5KEGG:ath:AT5G03350
OMA:ERYKAWIPaxDb:Q9LZF5Pfam:PF00139Pfam:Q9LZF5
PhylomeDB:Q9LZF5PIR:T48356PIRSF:PIRSF002690PRIDE:Q9LZF5
PRO:PR:Q9LZF5ProteinModelPortal:Q9LZF5Proteomes:UP000006548RefSeq:NP_195955.1
SMR:Q9LZF5STRING:3702.AT5G03350.1SUPFAM:SSF49899TAIR:AT5G03350
UniGene:At.33289UniProt:Q9LZF5
Coordinates (TAIR10) chr5:-:815804..816628
Molecular Weight (calculated) 30164.00 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.24
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIHKLCFLA LLLAHTTSAV NLNLNLKTSE LVFLGDAELG PASDGVSRSG ALSMTRDENP FSHGQSLWST PVPFKPSSNS SSPYPFETSF TFSISTRIKP
101: APGHGLAFVV VPSIESDGPG PAGYLGIFNK TNNGNPKNHI FAVEFDVFQD KGFGDINDNH VGININSVTS VVAEKAGYWV QTGIGKMKHW SFKEFKLSNG
201: ERYKAWIEYR NSKVTVTLAP ETVKKPKKPL IVAHLDLSKV FLQNMYPGFS GAMGRGVERH DIWSWTFQNS AKRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)