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AT4G38940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G10510.1); Has 1232 Blast hits to 1193 proteins in 71 species: Archae - 4; Bacteria - 55; Metazoa - 149; Fungi - 0; Plants - 1016; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:15329eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AK175314EMBL:AK175628EMBL:AL035679EMBL:AL161594
EMBL:AY087974EMBL:CP002687EnsemblPlants:AT4G38940EnsemblPlants:AT4G38940.1entrez:830049Gene3D:2.130.10.80GeneID:830049
Genevisible:Q9SVJ9GO:GO:0005634GO:GO:0016567Gramene:AT4G38940.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23HOGENOM:HOG000242515
InParanoid:Q9SVJ9IntAct:Q9SVJ9InterPro:IPR001810InterPro:IPR015916KEGG:ath:AT4G38940OMA:WCAEIAVPaxDb:Q9SVJ9
Pfam:PF00646Pfam:PF13964Pfam:Q9SVJ9Pfscan:PS50181PhylomeDB:Q9SVJ9PIR:T06054PRIDE:Q9SVJ9
PRO:PR:Q9SVJ9PROSITE:PS50181ProteinModelPortal:Q9SVJ9Proteomes:UP000006548RefSeq:NP_195605.1SMART:SM00256STRING:3702.AT4G38940.1
SUPFAM:0052715SUPFAM:SSF81383TAIR:AT4G38940UniGene:At.31132UniPathway:UPA00143UniProt:Q9SVJ9
Coordinates (TAIR10) chr4:+:18152848..18153960
Molecular Weight (calculated) 42075.00 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.13
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)