AT4G30990.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Down-regulated-in-metastasis protein (InterPro:IPR011430), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36722.1); Has 687 Blast hits to 410 proteins in 187 species: Archae - 0; Bacteria - 2; Metazoa - 222; Fungi - 236; Plants - 89; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:15084456..15097860 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 294817.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.18 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||
| Length | 2599 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MATSADARAV KSLNTSEGRK RFVFKSASQR TNDIDNISNY RNLDKVKAEP SEGSTFFRDC LIEWRELNTA EDFILFYEEM LPSVQSLSLI IMQKERIFSN 0101: LVSRLQMKAR LSLEPILRLI AALSRDLLND FIPFLPQIVN SFVTLLNNGA HNDPEIIQQV FTSWASIIVS LQKYLVCDIE GILRDTLELR YYPKDNISEF 0201: MSESMSFLLR KAQDEQLEKG MKMILSEVAH PSKKAGGVGV LYNVMRGTYG RLHSKAGRVL SFLLKDSTLS FLDNFPQGPC TVVEVVSLVL QRICEDLEAE 0301: KLSAMWEYLY KKINKSISNK KSVHLSRLLS VLMAVVKIKE GRKVHDIPSL IGIVSRIVST FFTSSETAVE GDNLSAVLDE VLELILCTIN TVNEMETVAS 0401: LWAPIFALKS SSLLTFLREF LKKDQSVVKA FTKNILCAIN NMIWESSEEV IPLLLTLCEE HKTQQTSHDV VNSISQTFES RYERIHEFLE AKIKKVQQNI 0501: ENAGLAQINE AELAAIWGVV KCYPYFKVDS SLLICFKKTL RQHLAVSDVD TCSGPELMWQ SLLGTTLRSC YKMTGINHSD LEEALSFAKD YKSCEQVLSP 0601: VADVLEFMHR PALAHGRSKP YPELQANKAG DAFEIFSENL RHPNKNIRLM TLRILCHFET LSSDPSFEEH PPKKKMKTEK NVLQLLLLFE ETAPTVDTSR 0701: MLAGYISTIQ DNLSAGRIHS AYVKLVLNGM LGILHISYRP LCVQASECLA VLVRKYTGAV WSDFVCYLGQ CQLKFETLHD HSENANQSMS ERHACNLNLN 0801: GRFNLFLFPP SAITPTATVS DVVSQLLQTL QKASSVAQSR ASEILPLLLK FLGYNSENPG SVGSYNGRVC KGEDWKTVLV QWLTLLKLMK NPRSFCFSQF 0901: LNDILQNRFL DDNDAEIQTN VLECLLLAND FLLPHRQHLL NLIKPKELRE ELTTWNLSEN IGEPHRSYIF SLVIRILMPK VRTLKNSASR KHTSIRHRKA 1001: VLCFISQLDV NELALFFALL IKPLNIISEE TMDSFWSSGK SSLDYFQNSN FLKYFTVDTI STLSRNQKFG FLHVIQHILE VFDELRVRPF LDFMMGCVVR 1101: LLVNYAPNVD EEMNIDSLAL RNVTAAPSTS DDKENASINH DQAGTAFKQF KELRSLCLKI IAHVLDKYED CDLGSEFWDL FFSAVSPLIK SFKQEGSSSE 1201: KPSSLFSCFL SMSKSRNLVN LLCREESLVP DIFSILTVTT ASEAIKSSAL KFIENLLCLD NVLGEDENMI RGFVDPYIEA LINSLHSLFI GDILKRKSVK 1301: YHGEREIKIL KLLSKRMQDR SHVMKYLDVL LSFLNKSVKD PDIRREALLA IQDIIAYLGM ESTSKIINTV SPLLVDAELD VRLCICDLLE SLAKIDFSLD 1401: DVAKRVRDMN AISAMEVDDL DYEKIVNAYV EINADFFIKS SEQHTMIILS QSSILCREAP AHSEFGKEVK NADVSWTGDR VLCILRNFIL KHIGDAINRG 1501: GIIIKEWILL IREMVTKLPD AANLSAFRPL CSEDENVDFF KAIVHIQAHR RARAISRFSS VVKDSSLPEG VVRKLLVSVF FNMLLEGQDG KDNNVRNACT 1601: EALASISAHM SWTSYYALLN RCFREMNKHT KKGKILLRLI CLILDKFHFA KDGYPHEAEE IRTCLQKIVF PRMQKLMNSD SDNVNVNSSV AALKVLKLLP 1701: EDVLDSNLSS IVHKIASFLK NRLESTRDEA RLALVACLKE LGLEYLQVVV NILRAILKRG SEVHVLGYTL NSILSKCLSN PTCGKLDHCL VDLLAVVETD 1801: ILGEVAEQKE VEKFASKMKE TRKRKSFETL KLIAENVTFR SHGLKLLSPV TAQLQRHLTP KIKTNLEKML KQIAAGIEGN TSVDQGDLFL FIYGLVDDGI 1901: NNRSGLGDQV SLPPSKKKKK SRDLKETSGL CFGPKSCPHL ITVFALDLFY NRMKKLRLDN TDEELLSKCF TSLVKFPLPS LTSEADELKT ALLTIAQSAV 2001: SSSSPLVQSC LKLLTTLLKN INITLSSEQL KMLIQFPIFI DLESDSSFVT LSLLKAIMNR KLVVPEIYDI AIQVSKLMVN SQLESIRKKC KHILLQFMVH 2101: YTLSEKRLEQ HVNFLLENLR YEFPTGREAV LDMLHALILK FSEPNLGKQS VLDQQSQKLF IQLTVCLSNE TDRKVLPLVG AVIEVLIGRM SKDQVDSSLL 2201: YCLCWYKQQN LSAAAAQVLG FFISAMKKTF RKHIYNTVED ARTILESAIS ASSLQLQDTV EEASLPFWKE AYYSLVMIEK MLEQFPDLRF GKDLEDIWKM 2301: VFKFLLHPHA WLRNKSCRLL NLYFEALAGR KRPECRTLVA DSLLEKPSSL FMVAVSLCFQ LKEQPTTGNI DVDLLTANIV FAVSSLHSLI GQFDQATHNR 2401: FWSSLGEDEQ VVFLKAFEVL DAGKGRSTFL ALTSGKRTEN GDDDVRNVMI GSLLKRMGKI ALDMESVQMR VMFNVYKSFA SQLNQEECRL YAYKILLPLY 2501: KVCEGYTGKI VTDELKQLAE EVRDSIRDKS LGNKMFVEVY SEIRNSLRTK RDKRKREEKL MAVVNPERNA KRKLRLASKN KANKKRRMTS MKLSRWACS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)