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AT4G17140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pleckstrin homology (PH) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2762 Blast hits to 1565 proteins in 213 species: Archae - 0; Bacteria - 36; Metazoa - 1081; Fungi - 437; Plants - 621; Viruses - 0; Other Eukaryotes - 587 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5043eggNOG:KOG1809EMBL:CP002687EnsemblPlants:AT4G17140EnsemblPlants:AT4G17140.1entrez:827424ExpressionAtlas:F4JNE4
Gene3D:2.30.29.30GeneID:827424Gramene:AT4G17140.1hmmpanther:PTHR16166hmmpanther:PTHR16166:SF105InterPro:IPR001849InterPro:IPR009291
InterPro:IPR011993InterPro:IPR026847InterPro:IPR026854InterPro:IPR031642InterPro:IPR031646PANTHER:PTHR16166PaxDb:F4JNE4
Pfam:PF06101Pfam:PF12624Pfam:PF16908Pfam:PF16910Pfscan:PS50003PRIDE:F4JNE4PROSITE:PS50003
ProteinModelPortal:F4JNE4Proteomes:UP000006548RefSeq:NP_193447.5SMART:SM00233STRING:3702.AT4G17140.3SUPFAM:SSF50729TAIR:AT4G17140
UniGene:At.33023UniProt:F4JNE4
Coordinates (TAIR10) chr4:-:9613617..9636618
Molecular Weight (calculated) 471034.00 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.23
Length 4216 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLEDQVAYLL QRYLGNYVRG LNKEALKISV WQGDVELKNM QLKPEALNAL KLPVRVKAGF LGSVKLKVPW TRLGQEPVVV YLDRIFVLAE PATDVEGLSE
0101: DSIQEAKRNL IREMETKLVE RARRLQTEMN KSWMGSVINT IVGNLKLSIS NIHIRYEDLE SNPGHPFSAG VTLEKLSAVT IDESGKETFI TGGTLDSIQK
0201: SVELDRLAFY LDSDMSPWHI DKPWEVLTPF EWDQIFRYGT KDGKPADCLT RKHFYILQPV SGNAKYSKSQ ANESSNAVQP LQKAYVNLDD VTLCLSKGGY
0301: RDVMKLADNF AAFNQRLKYA HYRPSVPVKI DAKSWWKYAY RVVSEQIKIA SGRMSWEHVL KYTSLRKRYI TQYASLLKSD ISRIVVDDDE EIEALDRELD
0401: TDVILQWRML AHKFVERSVQ AENYSKKQQA KSSWWPFGGK SEVSGGEGES IQFTDEDWER LNKVIGYKEG DEQSIINNAK PDALHTFLEV QMKRSASKLY
0501: DGEKECLAEL SCEGLNCSVK LFPETKIADI KLGRYRLSSP SGLLAESAPA SHSVLAVFCY KPFDAKVDWS LVAKASPCYM TYLKDSIDGI VNFFESSTAV
0601: SQTIALETAA AVQSTIDEVR RTAQEGMNRA LKDHSRFLLD LDIAAPKITI PTEFRPDNHR STKLLLDLGN LVIRSQDDYK HELTEEMDMY LQFDLVLSDV
0701: SALLVDGDYS WKQLSSKRAS SSGRESSVTF LPVIDKCGVL LKLQQIRRPN PAYPSTRLAV RLPSLGFHFS PARYHRLMQV AQIFQTKDDE SSQILRPWEE
0801: ADFEGWLSIL SWKGREASWQ RRYLCLVGPF IYVLESPGSK SYKKYTSLRG KHIYKVPVEL AGGVEHVLSI RNASRISEKG LRSHSDDYSR KTWHSRLQGA
0901: VYRASGVYCE TVPLTGSAPI AGLSDTSSDS EESETEQKDG FDLSNLESVY VTGVLDELKI CFSYGHQDDA SFMAVLLARE SKLFEFRALG GKVEVSMRGS
1001: DMFIGTVLKS LEIEDLVSHS GLNESCYLAR SFIQSSEMLP SFEDAESRSP ERLDPTSSEG EEKFYEAPEI LVDSIDYTSL RTPSFSRIDG LLPVDNKNIT
1101: KPSNETTESL DSFVKAQIVI YHQTSPQYKN IDNQVMVTLA TLSFFCRRPT ILAILEFVNA INVEDPSCES FEDNSPVAGE HTSPRRDGFE DSRDAAVKGL
1201: LGKGKSRIIF NLELNMARAQ IFLMNENGTK FATLSQDNLL TDIKVFPNSF SIKASLGNLR ISDDSLPDNH MYFWICDMRD PGGTSFVELV FTSFSIIDED
1301: YEGFDYCLSG QFSEVRIVYL NRFIQEVAEY FMGLVPSDSK GVVKMKDQIT DSEKWFTTSE IEGSPALKLD LSLKKPIIVM PRHTDSPDYL KLDIVHITVD
1401: NTFQWFAGDK NELNAVHVET MKIMVMDINL NVGSGAEIGE SIIQDVKGVS VTINRSLRDL LHQIPSIEVS IEIDELRAAL SNREYQILTE CAQSNISELP
1501: HAVPPLSGDV VTSSRNLHET LTSEDTNAAQ TEKTDTWISM KVSVVINLVE LCLYAGTARD TPLAAVQISG GWLLYKSNTH DEGFLTATLK GFSVIDNREG
1601: TEKEFRLAVG RPADLDFGDS HSVTDKNQGL TQSHVTTGSD IGPFPSMLTL DAQFGQLSTF VSVSIQRPQL LVALDFLLAV VEFFVPTIGS VLSSEEDKNL
1701: NMVDAIVMDK SIYKQQTAEA FLSPLGPLIA EDEKFDNFVY DGNGGTLYLK DRNGGILSSP SIEPIIYVGS GKRLQFRNVV FKNGQVLDSC ISLGACSSYS
1801: VSREDGVELE VYHKAPQQDS ERKEDPVSQS PSTTTERSTE MIIEFQAIGP ELTFYNTSKD VVKTPLLSNK LLHAQLDAYG RVVIKNDEIK MSAHTLGLTM
1901: ESNGVKILEP FDTFVKYSSV SGKTNIRLSV SNIFMNFSFS ILRLFIAVEE DILSFLRMTS RKMTVVCSEF DKIGTIRNPC TDQIYAFWRP HPPPGFASLG
2001: DYLTPLDKPP TKGVLVVNTN LMRVKRPLSF KLIWSPLASG GLGGSSMDDK DERDSSCSIW FPEAPKGYVA LSCVVSSGST PPSLASTFCI LASSVSPCSL
2101: RDCVAISSTD ISQSSLAFWR VDNSVGSFLP ADPSTLNLLG RPYELRHILF GSTAVLPKES SYVDDRTTPD DIIQPTRPQP LNSVNSGHRF EAVATFELIW
2201: WNRGSGSQKK VSIWRPIVSE GMAYFGDIAV SGYEPPNSCV VLHDTSDQEI LKAAVDFQLV GRVKKHRGVE SISFWMPQAP PGFVSLGCVA CKGSPKPYDF
2301: TKLRCARSDM VAGDHFADES LWDTSDVWQR VEPFSIWSIG NELKTFIVRS GLKKPPRRFA LKLADQGLPG GTDNMVIHAE IGTFSAALFD DYGGLMVPLV
2401: NVSLNNISFG LLGKTDYTNS TINFSLAARS YNDKYEAWEP LIEPADGFLR YQFNPRSFGA VSQLRLTSTK DLNVNISVSN ANTIIQAYSS WNSLSNVHGY
2501: HKERGALPLV DNGKSVIEVH QKKNYFIIPQ NKLGQDIYIR ATEIKGFKDI VKMPSGDVRP VKVPVLTNML DSHLRGELCR NPRIMVTVIV MDAQLPRTCG
2601: LSSHQYTGVI RLSPNQTSPV ESELRQQSAR TCGSVSNMLS SELEVVDWNE IFFFRIDSLD DFVLELIVTD VGKGAPVGSF SAPLKQIAQY MKDNVYQHNY
2701: ANDLVWLDLS TTETMSINQG DQRKNCGKIR CAVLLPAKSK VDQSKSFREK KSGFLQVSPS IEGPWTTVRL NYAAPAACWR LGNDVVASEV SMQDGNRYVN
2801: VRSLVSVENN TDFLLDLCLQ SKVNSIPDIP IGLLKPGDTL PVPLSGLTQS ASYVLKLKCV FPDGSDEYSW SSVVSRPGGA EVSCESEPEI CISALTESEH
2901: LLFCTQINST SSGDNQKLWF CLKTQATEIA KDIRSDPIQD WTLVVKSPFS IANCLPFGAE YSVLEAQASG HFICRCRGVF ISGETVKVYS VDIRNPLYFS
3001: LLPQRGWLPM HEAVLISHPN GVPAKTIGLR SSATGRIAQV ILEQNYDEQQ IVLSKIIRVY APFWFSIARC PSLTLRLLDL SGKKQTRKVG LPFRSKKNDE
3101: VVLDEVTEEE IYEGHTIAST LNFKLLGLSV SISQFGNQQH GPVKDLSALG DMDGSLDVDA YDPDGNCMRL FLSTKPCAYQ SVPTKMNQKY SMLMIQGSPL
3201: FSSQVGEMNS RERHKNKRMV KNVVEGVHWK YVAYDICSVK PVRLLGAVRL RETEWSFPVQ VTREDTIVLV LKSKNGARRY VKAEIRGFEE GSRFIVVFRL
3301: GPSNGPMRVE NRSTVKSISV RQSGFGEDSW VLLEPLTTEN FAWEDPYGQK FLDAKVESDH RSGVFKVDME KGAVDSELCR ELEVNFDVQE IGDIKIARFT
3401: DDDSTSQSSN EIISLTSIGN HGYSTPQTPT EHKTTTLEVI IEMGLVGISL VDHMPKELSY FYLERVFVSY STGYDEGRTS RFKIILGRLQ IDNQLPLTLM
3501: PVLLAPDNTG DSRQPVLKMT ITMCNEETDG IQVYPYVYVR VTDNTWRLNI HEPIIWASAD FYNKLQMDRL PKSSSVAQVD PEIHINLIDV SEVRLKVSLE
3601: TAPAQRPHGI LGVWSPILSA VGNAFKIQVH LRRVMHRDRF IRKSSILPAI GNRIWRDLIH NPLHLIFSVD VLGMTSSTLA SLSKGFAELS TDGQFMQLRA
3701: KQVWSRRITG VGDAIVQGTE ALAQGVAFGV SGVVTKPVES ARENGILGFA HGVGRAFLGF IVQPVSGALD FFSLTVDGIG ASCSRCLEVL SNRTALERIR
3801: NPRAVHADGI LREYDEKEAI GQMLLHLAEA SRHFGCTEIF REPSKFALSD CYEEHFLVPY KRIVMVTNKR VVLLQCSDLD KMDKKPSKIM WDVPWEELMA
3901: LELAKAGSQR PSHLILHLKS FRKSESFAQV IKCSVPEDLN GLEPQAVRIC SVVRKMWKAY QSNMKNLVLK VPSSQRHVYF AWNEADGRDS KTYKNKAIIK
4001: SRELSSSSSV SDDKKLVKHS INFSKIWSSE RESKGRCSLC KKQDSEDGGV CTIWRPSCPA GFVSVGDVAH VGSHPPNVAA VYNNTNGVFA LPVGYDLVWR
4101: NCLDDYISPV SIWHPRAPEG FVSPGCVAVA GFIEPELNTV YCMPTSLAEQ TEFEEQKVWS APDSYPWACQ IYQVRSDALH FMALRQTKED SDWKAIRVRD
4201: DYRSIESESG KNLRLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)