AT4G17140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pleckstrin homology (PH) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2762 Blast hits to 1565 proteins in 213 species: Archae - 0; Bacteria - 36; Metazoa - 1081; Fungi - 437; Plants - 621; Viruses - 0; Other Eukaryotes - 587 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9613617..9636618 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 471034.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 4216 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLEDQVAYLL QRYLGNYVRG LNKEALKISV WQGDVELKNM QLKPEALNAL KLPVRVKAGF LGSVKLKVPW TRLGQEPVVV YLDRIFVLAE PATDVEGLSE 0101: DSIQEAKRNL IREMETKLVE RARRLQTEMN KSWMGSVINT IVGNLKLSIS NIHIRYEDLE SNPGHPFSAG VTLEKLSAVT IDESGKETFI TGGTLDSIQK 0201: SVELDRLAFY LDSDMSPWHI DKPWEVLTPF EWDQIFRYGT KDGKPADCLT RKHFYILQPV SGNAKYSKSQ ANESSNAVQP LQKAYVNLDD VTLCLSKGGY 0301: RDVMKLADNF AAFNQRLKYA HYRPSVPVKI DAKSWWKYAY RVVSEQIKIA SGRMSWEHVL KYTSLRKRYI TQYASLLKSD ISRIVVDDDE EIEALDRELD 0401: TDVILQWRML AHKFVERSVQ AENYSKKQQA KSSWWPFGGK SEVSGGEGES IQFTDEDWER LNKVIGYKEG DEQSIINNAK PDALHTFLEV QMKRSASKLY 0501: DGEKECLAEL SCEGLNCSVK LFPETKIADI KLGRYRLSSP SGLLAESAPA SHSVLAVFCY KPFDAKVDWS LVAKASPCYM TYLKDSIDGI VNFFESSTAV 0601: SQTIALETAA AVQSTIDEVR RTAQEGMNRA LKDHSRFLLD LDIAAPKITI PTEFRPDNHR STKLLLDLGN LVIRSQDDYK HELTEEMDMY LQFDLVLSDV 0701: SALLVDGDYS WKQLSSKRAS SSGRESSVTF LPVIDKCGVL LKLQQIRRPN PAYPSTRLAV RLPSLGFHFS PARYHRLMQV AQIFQTKDDE SSQILRPWEE 0801: ADFEGWLSIL SWKGREASWQ RRYLCLVGPF IYVLESPGSK SYKKYTSLRG KHIYKVPVEL AGGVEHVLSI RNASRISEKG LRSHSDDYSR KTWHSRLQGA 0901: VYRASGVYCE TVPLTGSAPI AGLSDTSSDS EESETEQKDG FDLSNLESVY VTGVLDELKI CFSYGHQDDA SFMAVLLARE SKLFEFRALG GKVEVSMRGS 1001: DMFIGTVLKS LEIEDLVSHS GLNESCYLAR SFIQSSEMLP SFEDAESRSP ERLDPTSSEG EEKFYEAPEI LVDSIDYTSL RTPSFSRIDG LLPVDNKNIT 1101: KPSNETTESL DSFVKAQIVI YHQTSPQYKN IDNQVMVTLA TLSFFCRRPT ILAILEFVNA INVEDPSCES FEDNSPVAGE HTSPRRDGFE DSRDAAVKGL 1201: LGKGKSRIIF NLELNMARAQ IFLMNENGTK FATLSQDNLL TDIKVFPNSF SIKASLGNLR ISDDSLPDNH MYFWICDMRD PGGTSFVELV FTSFSIIDED 1301: YEGFDYCLSG QFSEVRIVYL NRFIQEVAEY FMGLVPSDSK GVVKMKDQIT DSEKWFTTSE IEGSPALKLD LSLKKPIIVM PRHTDSPDYL KLDIVHITVD 1401: NTFQWFAGDK NELNAVHVET MKIMVMDINL NVGSGAEIGE SIIQDVKGVS VTINRSLRDL LHQIPSIEVS IEIDELRAAL SNREYQILTE CAQSNISELP 1501: HAVPPLSGDV VTSSRNLHET LTSEDTNAAQ TEKTDTWISM KVSVVINLVE LCLYAGTARD TPLAAVQISG GWLLYKSNTH DEGFLTATLK GFSVIDNREG 1601: TEKEFRLAVG RPADLDFGDS HSVTDKNQGL TQSHVTTGSD IGPFPSMLTL DAQFGQLSTF VSVSIQRPQL LVALDFLLAV VEFFVPTIGS VLSSEEDKNL 1701: NMVDAIVMDK SIYKQQTAEA FLSPLGPLIA EDEKFDNFVY DGNGGTLYLK DRNGGILSSP SIEPIIYVGS GKRLQFRNVV FKNGQVLDSC ISLGACSSYS 1801: VSREDGVELE VYHKAPQQDS ERKEDPVSQS PSTTTERSTE MIIEFQAIGP ELTFYNTSKD VVKTPLLSNK LLHAQLDAYG RVVIKNDEIK MSAHTLGLTM 1901: ESNGVKILEP FDTFVKYSSV SGKTNIRLSV SNIFMNFSFS ILRLFIAVEE DILSFLRMTS RKMTVVCSEF DKIGTIRNPC TDQIYAFWRP HPPPGFASLG 2001: DYLTPLDKPP TKGVLVVNTN LMRVKRPLSF KLIWSPLASG GLGGSSMDDK DERDSSCSIW FPEAPKGYVA LSCVVSSGST PPSLASTFCI LASSVSPCSL 2101: RDCVAISSTD ISQSSLAFWR VDNSVGSFLP ADPSTLNLLG RPYELRHILF GSTAVLPKES SYVDDRTTPD DIIQPTRPQP LNSVNSGHRF EAVATFELIW 2201: WNRGSGSQKK VSIWRPIVSE GMAYFGDIAV SGYEPPNSCV VLHDTSDQEI LKAAVDFQLV GRVKKHRGVE SISFWMPQAP PGFVSLGCVA CKGSPKPYDF 2301: TKLRCARSDM VAGDHFADES LWDTSDVWQR VEPFSIWSIG NELKTFIVRS GLKKPPRRFA LKLADQGLPG GTDNMVIHAE IGTFSAALFD DYGGLMVPLV 2401: NVSLNNISFG LLGKTDYTNS TINFSLAARS YNDKYEAWEP LIEPADGFLR YQFNPRSFGA VSQLRLTSTK DLNVNISVSN ANTIIQAYSS WNSLSNVHGY 2501: HKERGALPLV DNGKSVIEVH QKKNYFIIPQ NKLGQDIYIR ATEIKGFKDI VKMPSGDVRP VKVPVLTNML DSHLRGELCR NPRIMVTVIV MDAQLPRTCG 2601: LSSHQYTGVI RLSPNQTSPV ESELRQQSAR TCGSVSNMLS SELEVVDWNE IFFFRIDSLD DFVLELIVTD VGKGAPVGSF SAPLKQIAQY MKDNVYQHNY 2701: ANDLVWLDLS TTETMSINQG DQRKNCGKIR CAVLLPAKSK VDQSKSFREK KSGFLQVSPS IEGPWTTVRL NYAAPAACWR LGNDVVASEV SMQDGNRYVN 2801: VRSLVSVENN TDFLLDLCLQ SKVNSIPDIP IGLLKPGDTL PVPLSGLTQS ASYVLKLKCV FPDGSDEYSW SSVVSRPGGA EVSCESEPEI CISALTESEH 2901: LLFCTQINST SSGDNQKLWF CLKTQATEIA KDIRSDPIQD WTLVVKSPFS IANCLPFGAE YSVLEAQASG HFICRCRGVF ISGETVKVYS VDIRNPLYFS 3001: LLPQRGWLPM HEAVLISHPN GVPAKTIGLR SSATGRIAQV ILEQNYDEQQ IVLSKIIRVY APFWFSIARC PSLTLRLLDL SGKKQTRKVG LPFRSKKNDE 3101: VVLDEVTEEE IYEGHTIAST LNFKLLGLSV SISQFGNQQH GPVKDLSALG DMDGSLDVDA YDPDGNCMRL FLSTKPCAYQ SVPTKMNQKY SMLMIQGSPL 3201: FSSQVGEMNS RERHKNKRMV KNVVEGVHWK YVAYDICSVK PVRLLGAVRL RETEWSFPVQ VTREDTIVLV LKSKNGARRY VKAEIRGFEE GSRFIVVFRL 3301: GPSNGPMRVE NRSTVKSISV RQSGFGEDSW VLLEPLTTEN FAWEDPYGQK FLDAKVESDH RSGVFKVDME KGAVDSELCR ELEVNFDVQE IGDIKIARFT 3401: DDDSTSQSSN EIISLTSIGN HGYSTPQTPT EHKTTTLEVI IEMGLVGISL VDHMPKELSY FYLERVFVSY STGYDEGRTS RFKIILGRLQ IDNQLPLTLM 3501: PVLLAPDNTG DSRQPVLKMT ITMCNEETDG IQVYPYVYVR VTDNTWRLNI HEPIIWASAD FYNKLQMDRL PKSSSVAQVD PEIHINLIDV SEVRLKVSLE 3601: TAPAQRPHGI LGVWSPILSA VGNAFKIQVH LRRVMHRDRF IRKSSILPAI GNRIWRDLIH NPLHLIFSVD VLGMTSSTLA SLSKGFAELS TDGQFMQLRA 3701: KQVWSRRITG VGDAIVQGTE ALAQGVAFGV SGVVTKPVES ARENGILGFA HGVGRAFLGF IVQPVSGALD FFSLTVDGIG ASCSRCLEVL SNRTALERIR 3801: NPRAVHADGI LREYDEKEAI GQMLLHLAEA SRHFGCTEIF REPSKFALSD CYEEHFLVPY KRIVMVTNKR VVLLQCSDLD KMDKKPSKIM WDVPWEELMA 3901: LELAKAGSQR PSHLILHLKS FRKSESFAQV IKCSVPEDLN GLEPQAVRIC SVVRKMWKAY QSNMKNLVLK VPSSQRHVYF AWNEADGRDS KTYKNKAIIK 4001: SRELSSSSSV SDDKKLVKHS INFSKIWSSE RESKGRCSLC KKQDSEDGGV CTIWRPSCPA GFVSVGDVAH VGSHPPNVAA VYNNTNGVFA LPVGYDLVWR 4101: NCLDDYISPV SIWHPRAPEG FVSPGCVAVA GFIEPELNTV YCMPTSLAEQ TEFEEQKVWS APDSYPWACQ IYQVRSDALH FMALRQTKED SDWKAIRVRD 4201: DYRSIESESG KNLRLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)