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AT4G16880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002687EnsemblPlants:AT4G16880EnsemblPlants:AT4G16880.1entrez:827396Gene3D:3.80.10.10
GeneID:827396Gramene:AT4G16880.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20InParanoid:F4JNB0InterPro:IPR011713InterPro:IPR032675
KEGG:ath:AT4G16880PaxDb:F4JNB0Pfam:PF07725ProteinModelPortal:F4JNB0Proteomes:UP000006548RefSeq:NP_193421.3SMR:F4JNB0
STRING:3702.AT4G16880.1SUPFAM:SSF52058TAIR:AT4G16880UniGene:At.33043UniProt:F4JNB0
Coordinates (TAIR10) chr4:-:9496550..9497149
Molecular Weight (calculated) 17925.90 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.32
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDSDLEKLW NGTQLLGSLK KMILRNSKYL KEIPDLSLAT NLERLDLCKC EVLESFPTPL NSESLEYLNL LRCPKLRNFP EIIMHSFRGE IDIEVADCLW
101: NKNLPGLGYL DCLRRCNPSK FRPEHLKDLT VRCNNKLEKL WEGVQVIHTY IIY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)