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AT4G15020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hAT transposon superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4I0eggNOG:ENOG410XWK2EMBL:CP002687EnsemblPlants:AT4G15020
EnsemblPlants:AT4G15020.1EnsemblPlants:AT4G15020.2entrez:827161GeneID:827161
GO:GO:0003677Gramene:AT4G15020.1Gramene:AT4G15020.2hmmpanther:PTHR32166
hmmpanther:PTHR32166:SF27InterPro:IPR003656InterPro:IPR007021InterPro:IPR008906
InterPro:IPR012337KEGG:ath:AT4G15020OMA:MISSDEWPfam:PF02892
Pfam:PF04937Pfam:PF05699Pfscan:PS50808PROSITE:PS50808
Proteomes:UP000006548RefSeq:NP_001154234.1RefSeq:NP_193238.5SUPFAM:SSF53098
TAIR:AT4G15020UniGene:At.33222UniProt:F4JJC1
Coordinates (TAIR10) chr4:+:8575806..8578372
Molecular Weight (calculated) 86648.50 Da
IEP (calculated) 5.60
GRAVY (calculated) -0.26
Length 768 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAELEPVAL TPQKQDNAWK HCEIYKYGDR LQMRCLYCRK MFKGGGITRV KEHLAGKKGQ GTICDQVPED VRLFLQQCID GTVRRQRKRH KSSSEPLSVA
101: SLPPIEGDMM VVQPDVNDGF KSPGSSDVVV QNESLLSGRT KQRTYRSKKN AFENGSASNN VDLIGRDMDN LIPVAISSVK NIVHPSFRDR ENTIHMAIGR
201: FLFGIGADFD AVNSVNFQPM IDAIASGGFG VSAPTHDDLR GWILKNCVEE MAKEIDECKA MWKRTGCSIL VEELNSDKGF KVLNFLVYCP EKVVFLKSVD
301: ASEVLSSADK LFELLSELVE EVGSTNVVQV ITKCDDYYVD AGKRLMLVYP SLYWVPCAAH CIDQMLEEFG KLGWISETIE QAQAITRFVY NHSGVLNLMW
401: KFTSGNDILL PAFSSSATNF ATLGRIAELK SNLQAMVTSA EWNECSYSEE PSGLVMNALT DEAFWKAVAL VNHLTSPLLR ALRIVCSEKR PAMGYVYAAL
501: YRAKDAIKTH LVNREDYIIY WKIIDRWWEQ QQHIPLLAAG FFLNPKLFYN TNEEIRSELI LSVLDCIERL VPDDKIQDKI IKELTSYKTA GGVFGRNLAI
601: RARDTMLPAE WWSTYGESCL NLSRFAIRIL SQTCSSSVSC RRNQIPVEHI YQSKNSIEQK RLSDLVFVQY NMRLRQLGPG SGDDTLDPLS HNRIDVLKEW
701: VSGDQACVEG NGSADWKSLE SIHRNQVAPI IDDTEDLGSG FDDIEIFKVE KEVRDEGYYT NTSEKLFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)