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AT3G62190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.721
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); Has 1752 Blast hits to 1750 proteins in 478 species: Archae - 12; Bacteria - 767; Metazoa - 163; Fungi - 88; Plants - 94; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AL138651EMBL:AY058132EMBL:AY133639EMBL:CP002686EnsemblPlants:AT3G62190
EnsemblPlants:AT3G62190.1entrez:825392ExpressionAtlas:Q9M1Q5Gene3D:1.10.287.110GeneID:825392GO:GO:0016021Gramene:AT3G62190.1
HOGENOM:HOG000242477InterPro:IPR001623OMA:FPPYSRPPfam:PF00226Pfscan:PS50076PhylomeDB:Q9M1Q5PIR:T48011
PROSITE:PS50076Proteomes:UP000006548RefSeq:NP_191778.1SMART:SM00271SMR:Q9M1Q5STRING:3702.AT3G62190.1SUPFAM:SSF46565
TAIR:AT3G62190TMHMM:TMhelixUniGene:At.23397UniGene:At.66507UniProt:Q9M1Q5
Coordinates (TAIR10) chr3:+:23021146..23022614
Molecular Weight (calculated) 15469.60 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.43
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVEEAKILL GFPPNSRPDP SQVKAAYRKK VWESHPDLFP DDQKLVAESK FKSISEAYSC LESGDVKGQW YYRAGVYSRV VKTGVPRPYS SAKRGNRWLI
101: GAPFLLIVLG TIGLGGIKAN RAYNLQKQTF PSHNPFLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)