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AT3G60850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE7VeggNOG:ENOG410Y9U1EMBL:AL162295EMBL:BT002453EMBL:BT008397EMBL:CP002686EnsemblPlants:AT3G60850
EnsemblPlants:AT3G60850.1entrez:825256GeneID:825256Gramene:AT3G60850.1hmmpanther:PTHR37745HOGENOM:HOG000077480KEGG:ath:AT3G60850
ncoils:CoilOMA:HISTQFYPhylomeDB:Q9LZX9PIR:T47896Proteomes:UP000006548RefSeq:NP_191644.1TAIR:AT3G60850
UniGene:At.34367UniProt:Q9LZX9
Coordinates (TAIR10) chr3:+:22482053..22483999
Molecular Weight (calculated) 72918.10 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.63
Length 648 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTHKTEEGL FHHHDLDPTA DILVQSPPSI LHHHHDHNSE VDPAFSLPEF ILFRSSPSGD SPGLSSDEQD DSLTGNPQIA DSSNSRVSSA GRDGLFISPD
101: PHISSQFYTF NAASHSLMCR CLREGRLATP AEIRIATPRS VLKSWRAVWK DRNEETAYLT AWKRIQDKLT SRLDPATGNE FLCFKNNSQQ FVSHINQWQD
201: IVMGFHADGD LKHLGQKETI DRIKQVWTVG AKLYGIPESF IRVCVAACPV CNADSGSASR NKRRRFEYTE SLDVPAKEVP DRLQQLAAKH KVVLCIRQKY
301: IRYKPFMAEV KDYACHRAGE PVSIKKSRIL KREPYQSKRC GCGFRIRAIV PIANYSEKTK TFVYQEEGTA VFKLYAVHSG HEPGAMDGNA RIMHRVVGHK
401: GFLMDQETVY GVRDEDVETE GMGLTGKDER AEMQFTVLHQ VQELRSELGT LEGKIGNFSQ EMLGSVSTEL FEMLNKIRNI GVESAQDTTG LVAEKSHSDE
501: ILVGDNDLVH WSDHHHEHLY GDGKDAELIE DDEDSFERSL DDVVPWEQIT PPSDCTNQKE DLLSETCKPE KWLKCNDFDE NSILNSEDSK LTKPMSHDGG
601: SIETDVGLAG IQVDSFYQEN SKWYDSPCGL DSNTDGEDTG FSRHGEIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)