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AT3G60080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G44330.1); Has 9920 Blast hits to 9845 proteins in 282 species: Archae - 0; Bacteria - 98; Metazoa - 2725; Fungi - 927; Plants - 4887; Viruses - 7; Other Eukaryotes - 1276 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK229330EMBL:AL138658EMBL:BT020239EMBL:BT020570EMBL:CP002686
EnsemblPlants:AT3G60080EnsemblPlants:AT3G60080.1entrez:825178Gene3D:3.30.40.10GeneID:825178GO:GO:0008270Gramene:AT3G60080.1
hmmpanther:PTHR22763hmmpanther:PTHR22763:SF43HOGENOM:HOG000153215InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT3G60080OMA:ERRTYWC
Pfam:PF13639Pfam:PF14369Pfscan:PS50089PhylomeDB:Q9M1D5PIR:T47832PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_191567.1SMART:SM00184SMR:Q9M1D5SUPFAM:SSF57850TAIR:AT3G60080UniGene:At.34507UniProt:Q9M1D5
Coordinates (TAIR10) chr3:+:22187635..22188555
Molecular Weight (calculated) 33799.80 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.48
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSTTTTTT VHGEPERRTY WCHECDMSLS LLSSSDSDSD SSPLLCPQCR VDFLERMDHD SSSSNLFDVT IGDFEEQDGE NDDEDDEEDW CFVDPAVNSD
101: DNFLLDSPYL HRLLRHLASD NSGSSSSSSS SSSSSLLKSS DIDSIPTIQI SSSLLCSTDD SDPDSVLLCA VCKEDFIIGE SARRLPCSHI YHSDCIVPWL
201: SDHNSCPLCR FELPTTAKVG IGGSEAEMRI RLSDLATIAA DGDDVEDDWL GIRNALRRLA RRHEQMRLGV GEMERNLART VSGLGIGMRR REEIEADRSN
301: VTTTPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)