AT3G27700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 3784 Blast hits to 2558 proteins in 341 species: Archae - 8; Bacteria - 515; Metazoa - 625; Fungi - 291; Plants - 164; Viruses - 7; Other Eukaryotes - 2174 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10257681..10261330 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99233.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 908 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELSVSSPKQ SVLSPPDCMS DPEEEHEISE EEDDDRNHKH RRKEETRSQS LEQDSSDQAF SRPYRKNYRH YENGNSFSEH EKRSFGTGSG QRVQFDNQRM 101: RSNPMFSRDS GPGRGRGNYG SWAQRDSRFN PVDLSSHMVQ VGSMGQGMFG GRGLAGVSAA QSAPWPPFGM IPGVPNGGLD GFHHLQGSLR PPLNAPLNMG 201: IPRQRCRDFE ERGFCLRGDM CPMEHGMNRI VVDDVQSLSQ FNLPVSVPGA PHLAASSKQV PAQFGGASFM NPKGAHGRTN EGGMAVDGLG YGDAYPSAGG 301: TDFYDPDQPL WNNSTGETSG AISTLNSHGV DENVAPLDDS NQDAAENGCG IRDSRSTSQS VWGRMKGSNS QANSKEKADA VLNSSAVPED QLKEVSVNSS 401: RHGKQNHVGE SVAKVVDSSN ISNDMMNNTR KPTQKAMRTL FVNYVPHESN RRDLILAHFQ KFGKVIDIHI PVNSERAFVQ FSKREEAESA LRAPDAVMGN 501: RFIKLWWANR DSIPDNGLST GSGASMKGRS MTASGAQNQF PIAAASKSNH VSSIAKVPTF QTGGAPSSSE QPKPVVVTTS GPKVTPLQQK KADTLERLKE 601: TLRKKQEMLE QKRNEYRKKL ATLEKQGTVV KREEADEPDA KRVKLDTASD SGAAIASPKT ESSTDKKVPI LKPLSTAKLS TETPSPDSKN FKQRPYSFTT 701: SLNAPMVNRY KLDNRTTTIK VVPPLPTGLA DVAVVKEHFS SYGEVSKVEL EDNASIDSGK DHETQNESRA ACVTFVKRSA AEKAFANAKC WQEHTLQLVW 801: VTRQSNRESN NNNNNSNSLS VSRDNLSSKN KCASVSNDPK PAVEVKTSST EEPENTNVSG DNDSTLDKQE TKESDNDNNK SNHESIEGAS EVIATAGTDE 901: EQSEQIHQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)