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AT3G27640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At3g27640-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 36714 Blast hits to 22017 proteins in 645 species: Archae - 42; Bacteria - 5151; Metazoa - 14249; Fungi - 8186; Plants - 4562; Viruses - 0; Other Eukaryotes - 4524 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRWKeggNOG:KOG0321EMBL:AY035167EMBL:AY063003EMBL:CP002686EnsemblPlants:AT3G27640EnsemblPlants:AT3G27640.1
entrez:822386Gene3D:2.130.10.10GeneID:822386GO:GO:0080008Gramene:AT3G27640.1hmmpanther:PTHR22852InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT3G27640KO:K11790OMA:IRDYFLV
Pfam:PF00400Pfam:PF11715Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q94C55PRINTS:PR00320PRO:PR:Q94C55
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548Reactome:R-ATH-110314RefSeq:NP_566822.1scanprosite:PS00678
SMART:SM00320SMR:Q94C55STRING:3702.AT3G27640.1SUPFAM:SSF50978TAIR:AT3G27640UniGene:At.19178UniProt:Q94C55
Coordinates (TAIR10) chr3:+:10232307..10235467
Molecular Weight (calculated) 59400.50 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.50
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MRDHTAQKIQ YPAGFRDSPM ESSRSRSVFV NIGLRELNGF RVRKRPFFAD SELICREIAG VAVEHDGIWT PPLAVSFCKT SRNSQLFAVS DEDGHVSLFN
101: SSSKKFASSA THQENTEKAR FRDWIAHYNA IFDISWIKGD SCLLTASGDQ TIKVWDVEEN KCTGVLIGHT GTVKSMCSHP TNSDLLVSGS RDGCFALWDL
201: RCKSSSHKEE FCINSTGMVK GAHLSPLSKR IRRRKAASSS ITSVLYVKDE ITIATAGAPD SALKFWDIRK LKAPFAQASP QSDPTNTKEK RSHGIVSLSQ
301: DSSGTYLTAS CKDNRIYLYN TLRLDKGPVQ SFSGCRIDSF FVRTMISPDG EYVLSGSSDG NAYIWQVNKP QVDPIILKGH DFEVTAVDWS PSEIGKVATA
401: SDDFTVRLWN IENNICTNAN ATASVSRVKR RVTALSNTEA KERLEMNRET ESPQKHSSLS SDDDYNNDQS MPIIRTPESQ KKKTSSSSSL SSLSSEEDII
501: CERTPETTFN SPSSVLNPPS SVKRRTIRDY FLVTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)